Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01450 | Canola | nucleus | 78.22 | 80.0 |
| Bra012119.1-P | Field mustard | nucleus | 78.22 | 80.0 |
| CDY12790 | Canola | nucleus | 75.56 | 77.63 |
| Bra037135.1-P | Field mustard | nucleus | 72.44 | 76.89 |
| CDY18628 | Canola | nucleus | 72.44 | 76.89 |
| CDX81350 | Canola | nucleus | 76.0 | 76.34 |
| AT3G50410.1 | Thale cress | nucleus | 59.11 | 52.57 |
| PGSC0003DMT400026137 | Potato | nucleus | 43.56 | 40.83 |
| VIT_03s0063g01350.t01 | Wine grape | nucleus | 30.22 | 39.31 |
| Solyc02g090220.2.1 | Tomato | nucleus | 41.78 | 36.43 |
| AT1G47655.1 | Thale cress | nucleus | 33.78 | 36.36 |
| AT3G21270.1 | Thale cress | nucleus | 28.44 | 31.37 |
| AT1G51700.1 | Thale cress | nucleus | 26.67 | 30.93 |
| TraesCS3D01G108600.1 | Wheat | nucleus | 29.78 | 29.13 |
| TraesCS3B01G125100.1 | Wheat | nucleus | 29.33 | 28.7 |
| TraesCS3A01G106500.1 | Wheat | nucleus | 29.78 | 28.15 |
| Zm00001d039482_P001 | Maize | nucleus | 28.0 | 27.27 |
| KXG31638 | Sorghum | nucleus | 28.44 | 27.23 |
| AT2G34140.1 | Thale cress | nucleus | 20.0 | 26.47 |
| AT1G29160.1 | Thale cress | nucleus | 20.0 | 25.71 |
| AT4G38000.1 | Thale cress | nucleus, plastid | 24.89 | 22.76 |
| AT5G62430.1 | Thale cress | nucleus | 20.44 | 15.44 |
| AT1G69570.1 | Thale cress | nucleus | 25.33 | 14.29 |
| AT1G26790.1 | Thale cress | nucleus, plastid | 22.67 | 13.71 |
| AT3G47500.1 | Thale cress | nucleus | 24.89 | 12.5 |
| AT5G39660.1 | Thale cress | nucleus | 24.0 | 11.82 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:836828 | ProteinID:AED98282.1 | ArrayExpress:AT5G66940 | EnsemblPlantsGene:AT5G66940 | RefSeq:AT5G66940 |
| TAIR:AT5G66940 | RefSeq:AT5G66940-TAIR-G | EnsemblPlants:AT5G66940.1 | TAIR:AT5G66940.1 | ProteinID:BAB08933.1 | ProteinID:BAH30655.1 |
| EMBL:BT029523 | UniProt:C0SVW4 | GO:GO:0000976 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR003851 | RefSeq:NP_201495.1 | PFAM:PD007478 | PFAM:PF02701 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0025022 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF12 | UniProt:Q9FGD6 |
| UniParc:UPI00000A3A78 | InterPro:Znf_Dof | SEG:seg | : | : | : |
Description
DOF5.8Dof zinc finger protein DOF5.8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGD6]
Coordinates
chr5:-:26727819..26728715
Molecular Weight (calculated)
24118.8 Da
IEP (calculated)
9.325
GRAVY (calculated)
-0.503
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSEFSESRR VPKIPHGQGG SVAIPTDQQE QLSCPRCEST NTKFCYYNNY NFSQPRHFCK SCRRYWTHGG TLRDIPVGGV SRKSSKRSRT YSSAATTSVV
101: GSRNFPLQAT PVLFPQSSSN GGITTAKGSA SSFYGGFSSL INYNAAVSRN GPGGGFNGPD AFGLGLGHGS YYEDVRYGQG ITVWPFSSGA TDAATTTSHI
201: AQIPATWQFE GQESKVGFVS GDYVA
101: GSRNFPLQAT PVLFPQSSSN GGITTAKGSA SSFYGGFSSL INYNAAVSRN GPGGGFNGPD AFGLGLGHGS YYEDVRYGQG ITVWPFSSGA TDAATTTSHI
201: AQIPATWQFE GQESKVGFVS GDYVA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.