Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66672 | Canola | nucleus | 79.02 | 82.9 |
| Bra018141.1-P | Field mustard | nucleus | 79.02 | 82.9 |
| CDY47405 | Canola | nucleus | 78.79 | 82.28 |
| AT5G62430.1 | Thale cress | nucleus | 45.98 | 69.13 |
| KRH63324 | Soybean | nucleus | 50.45 | 48.09 |
| KRH56903 | Soybean | nucleus | 50.67 | 47.99 |
| KRH03487 | Soybean | nucleus | 50.45 | 47.98 |
| KRH54567 | Soybean | nucleus | 48.66 | 47.6 |
| VIT_17s0000g06310.t01 | Wine grape | nucleus | 50.0 | 47.36 |
| VIT_01s0026g02580.t01 | Wine grape | nucleus | 46.21 | 43.4 |
| AT1G29160.1 | Thale cress | nucleus | 16.74 | 42.86 |
| AT2G34140.1 | Thale cress | nucleus | 15.85 | 41.76 |
| Solyc03g115940.2.1 | Tomato | nucleus | 45.76 | 40.92 |
| PGSC0003DMT400050273 | Potato | nucleus | 44.87 | 39.96 |
| PGSC0003DMT400083080 | Potato | nucleus | 40.18 | 36.59 |
| Solyc06g069760.2.1 | Tomato | nucleus | 39.51 | 35.98 |
| EER95426 | Sorghum | nucleus | 33.71 | 35.61 |
| TraesCS2A01G100800.1 | Wheat | nucleus | 37.72 | 35.28 |
| TraesCS2B01G118000.1 | Wheat | nucleus | 37.5 | 35.07 |
| HORVU2Hr1G017290.1 | Barley | nucleus | 36.83 | 34.74 |
| Zm00001d027846_P001 | Maize | nucleus | 33.48 | 34.72 |
| OQU90492 | Sorghum | nucleus | 37.5 | 34.71 |
| TraesCS4A01G017700.1 | Wheat | nucleus | 33.71 | 34.55 |
| TraesCS4B01G286400.1 | Wheat | nucleus | 33.26 | 34.41 |
| AT1G69570.1 | Thale cress | nucleus | 30.36 | 34.09 |
| Os07t0685000-02 | Rice | nucleus | 36.16 | 34.03 |
| HORVU4Hr1G074990.1 | Barley | nucleus | 33.48 | 33.94 |
| TraesCS2D01G100300.1 | Wheat | mitochondrion, nucleus | 37.72 | 33.73 |
| TraesCS4D01G285100.1 | Wheat | nucleus | 33.26 | 33.71 |
| Os03t0169600-01 | Rice | nucleus | 32.81 | 33.41 |
| AT5G39660.1 | Thale cress | nucleus | 33.48 | 32.82 |
| AT1G26790.1 | Thale cress | nucleus, plastid | 27.23 | 32.8 |
| Zm00001d022525_P001 | Maize | nucleus | 36.83 | 32.04 |
| AT4G38000.1 | Thale cress | nucleus, plastid | 15.4 | 28.05 |
| AT1G51700.1 | Thale cress | nucleus | 11.16 | 25.77 |
| AT3G21270.1 | Thale cress | nucleus | 11.61 | 25.49 |
| AT3G50410.1 | Thale cress | nucleus | 14.06 | 24.9 |
| AT5G66940.1 | Thale cress | nucleus | 12.5 | 24.89 |
| AT1G47655.1 | Thale cress | nucleus | 11.61 | 24.88 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:823904 | ProteinID:AEE78290.1 | EMBL:AF079503 | ArrayExpress:AT3G47500 | EnsemblPlantsGene:AT3G47500 |
| RefSeq:AT3G47500 | TAIR:AT3G47500 | RefSeq:AT3G47500-TAIR-G | EnsemblPlants:AT3G47500.1 | TAIR:AT3G47500.1 | EMBL:AY065152 |
| EMBL:AY084628 | EMBL:AY128757 | Unigene:At.519 | ProteinID:CAB61976.1 | Symbol:CDF3 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR003851 | RefSeq:NP_190334.1 | PFAM:PD007478 |
| PFAM:PF02701 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 |
| PANTHER:PTHR31089:SF7 | UniProt:Q8LFV3 | UniParc:UPI00000A4594 | InterPro:Znf_Dof | SEG:seg | : |
Description
CDF3Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3]
Coordinates
chr3:-:17503883..17506124
Molecular Weight (calculated)
49732.9 Da
IEP (calculated)
7.059
GRAVY (calculated)
-0.917
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMETRDPAI KLFGMKIPFP SVFESAVTVE DDEEDDWSGG DDKSPEKVTP ELSDKNNNNC NDNSFNNSKP ETLDKEEATS TDQIESSDTP EDNQQTTPDG
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI
101: KTLKKPTKIL PCPRCKSMET KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR KNKSSSSHYR HITISEALEA ARLDPGLQAN TRVLSFGLEA
201: QQQHVAAPMT PVMKLQEDQK VSNGARNRFH GLADQRLVAR VENGDDCSSG SSVTTSNNHS VDESRAQSGS VVEAQMNNNN NNNMNGYACI PGVPWPYTWN
301: PAMPPPGFYP PPGYPMPFYP YWTIPMLPPH QSSSPISQKC SNTNSPTLGK HPRDEGSSKK DNETERKQKA GCVLVPKTLR IDDPNEAAKS SIWTTLGIKN
401: EAMCKAGGMF KGFDHKTKMY NNDKAENSPV LSANPAALSR SHNFHEQI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.