Factsheet for Os03t0169600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0182600-03
Os08t0544800-01
Os09t0521300-00
Os11t0547000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G47500.1	Os11t0547000-01	AT1G68050.1	16002617
AT5G62430.1	Os01t0182600-03	AT1G22770.1	17872410
AT5G62430.1	Os11t0547000-01	AT1G68050.1	16002617
AT5G62430.1	Os08t0544800-01	AT5G51910.1	21798944
AT5G62430.1	Os09t0521300-00	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G074990.1	Barley	nucleus	76.82	76.47
EER95426	Sorghum	nucleus	73.64	76.42
TraesCS4D01G285100.1	Wheat	nucleus	75.91	75.57
TraesCS4B01G286400.1	Wheat	nucleus	74.09	75.29
TraesCS4A01G017700.1	Wheat	nucleus	74.77	75.29
Zm00001d027846_P001	Maize	nucleus	69.77	71.06
Os10t0406300-01	Rice	nucleus	24.32	55.15
AT5G62430.1	Thale cress	nucleus	29.09	42.95
CDY00286	Canola	nucleus	26.59	42.86
CDY67518	Canola	nucleus	28.41	42.81
CDY69084	Canola	nucleus	26.59	42.7
CDY69244	Canola	nucleus	27.95	42.12
Bra029261.1-P	Field mustard	nucleus	27.5	41.44
Bra010082.1-P	Field mustard	nucleus	24.55	40.3
VIT_17s0000g06310.t01	Wine grape	nucleus	39.55	36.79
VIT_01s0026g02580.t01	Wine grape	nucleus	39.09	36.06
KRH56903	Soybean	nucleus	38.18	35.52
KRH03487	Soybean	nucleus	37.73	35.24
KRH54567	Soybean	nucleus	36.14	34.72
CDY47405	Canola	nucleus	33.64	34.5
Bra018141.1-P	Field mustard	nucleus	33.18	34.19
CDY66672	Canola	nucleus	33.18	34.19
KRH63324	Soybean	nucleus	36.36	34.04
KRH18471	Soybean	nucleus	37.73	34.02
Solyc03g115940.2.1	Tomato	nucleus	38.18	33.53
KRG93541	Soybean	nucleus	29.32	33.51
PGSC0003DMT400050273	Potato	nucleus	37.95	33.2
AT3G47500.1	Thale cress	nucleus	33.41	32.81
Os07t0685000-02	Rice	nucleus	35.23	32.56
Os01t0758200-01	Rice	nucleus	15.45	32.23
PGSC0003DMT400083080	Potato	nucleus	34.55	30.89
Solyc06g069760.2.1	Tomato	nucleus	34.55	30.89
Os01t0264000-01	Rice	nucleus	30.0	26.61
Os01t0277500-01	Rice	nucleus	33.41	26.53
Os09t0475800-01	Rice	nucleus	12.73	24.35
Os04t0678400-01	Rice	plastid	10.91	23.3
Os08t0490100-01	Rice	nucleus	14.09	22.46
Os01t0673700-00	Rice	nucleus	11.36	15.2

Protein Annotations

MapMan:15.5.1.5	EntrezGene:4331765	ProteinID:AAL84292.1	ProteinID:ABF94195.1	EMBL:AK060900	EMBL:AK104523
EMBL:AY224429	ProteinID:BAF11015.1	ProteinID:BAS82514.1	ProteinID:EAZ25737.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003851	EnsemblPlantsGene:Os03g0169600	EnsemblPlants:Os03t0169600-01	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF3	UniProt:Q8S7W1	UniParc:UPI000005F89E	RefSeq:XP_015631794.1
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

RICE DOF DAILY FLUCTUATIONS 4Dof (DNA binding with one finger) transcription factor, Regulation of Flowering time, Brassinosteroid (BR) signaling to modulate plant architecture (Os03t0169600-01)

Coordinates

chr3:+:3738868..3741611

Molecular Weight (calculated)

47004.1 Da

IEP (calculated)

7.802

GRAVY (calculated)

-0.573

Length

440 amino acids

Sequence
(BLAST)

001: MGECKVGGGG GGGDCLIKLF GKTIPVPEPG ACAAGDVDKD LQHSGSSTTE PKTQENTVQD STSPPPQPEV VDTEDSSADK NSSENQQQQG DTANQKEKLK
101: KPDKILPCPR CSSMDTKFCY YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS VSAASHFLQR VRAALPGDPP LYAPVKTNGT VLSFGSDLST
201: LDLTEQMKHL KDKFIPTTGI KNTDEMPVGL CAEGLSKTEE SNQTNLKEKV SADRSPNVAQ HPCMNGGAMW PFGVAPPPAY YTSSIAIPFY PAAAAAVAAY
301: WGCMVPGAWN APWPPQSQSQ SVSSSSAASP VSTMTNCFRL GKHPRDGDEE LDSKGNGKVW VPKTVRIDDV DEVARSSIWS LIGIKGDKVG ADHGRGCKLA
401: KVFESKDEAK ASTHTAISSL PFMQGNPAAL TRSVTFQEGS

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.