Factsheet for Os08t0544800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CAA33930
Os01t0176700-01
Os01t0551100-01
Os02t0102600-01
Os02t0135800-02
Os02t0828566-01
Os03t0379300-01
Os03t0422702-00
Os05t0271300-00
Os05t0404200-01
Os05t0530500-02
Os06t0103500-01
Os07t0615800-00
Os07t0628500-01
Os08t0494375-00
Os08t0544800-01
Os09t0521300-00
Os11t0601700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51910.1	Os01t0176700-01	AT2G03500.1	21798944
AT5G51910.1	Os02t0135800-02	AT2G30050.1	21798944
AT5G51910.1	Os07t0615800-00	AT3G16980.1	21798944
AT5G51910.1	Os01t0551100-01	AT3G20420.1	21798944
AT5G51910.1	Os05t0271300-00	AT3G20420.1	21798944
AT5G51910.1	Os05t0530500-02	AT3G29160.1	21798944
AT5G51910.1	Os03t0379300-01	AT3G47640.1	21798944
AT5G51910.1	Os07t0628500-01	AT3G47640.1	21798944
AT5G51910.1	Os08t0494375-00	AT3G47640.1	21798944
AT5G51910.1	Os11t0601700-01	AT3G47640.1	21798944
AT5G51910.1	Os05t0404200-01	AT4G04800.1	21798944
AT5G51910.1	CAA33930	AT4G11175.1	21798944
AT5G51910.1	Os06t0103500-01	AT4G16760.1	21798944
AT5G51910.1	Os02t0102600-01	AT5G07840.1	21798944
AT5G51910.1	Os02t0828566-01	AT5G08330.1	21798944
AT5G51910.1	Os03t0422702-00	AT5G08330.1	21798944
AT5G51910.1	Os08t0544800-01	AT5G51910.1	21798944
AT5G51910.1	Os09t0521300-00	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80770	Sorghum	nucleus	79.09	82.17
Zm00001d031725_P001	Maize	nucleus	75.87	80.86
TraesCS4A01G355900.1	Wheat	nucleus	58.71	73.99
TraesCS5B01G516200.1	Wheat	cytosol, nucleus, peroxisome	67.29	71.92
TraesCS5D01G516300.1	Wheat	nucleus	66.22	71.8
HORVU5Hr1G117990.1	Barley	cytosol, mitochondrion, nucleus	67.29	66.93
Os03t0422702-00	Rice	cytosol, plastid	16.35	48.41
GSMUA_Achr3P12320_001	Banana	cytosol	20.91	38.61
Os04t0542302-00	Rice	cytosol, mitochondrion, nucleus	19.57	38.42
VIT_16s0022g02480.t01	Wine grape	nucleus	16.89	37.28
AT5G51910.1	Thale cress	nucleus	26.81	34.13
CDY27099	Canola	nucleus	25.47	34.05
Os04t0526000-01	Rice	plastid	18.77	33.98
CDX95656	Canola	nucleus	26.54	33.79
VIT_15s0048g01150.t01	Wine grape	nucleus	30.56	33.63
Os02t0828566-01	Rice	nucleus	21.18	33.47
KRG91429	Soybean	nucleus	28.95	33.13
KRH35393	Soybean	nucleus	27.61	33.12
CDX91612	Canola	nucleus	25.2	32.64
CDY53888	Canola	nucleus	27.08	32.48
Bra000395.1-P	Field mustard	nucleus	27.08	32.48
Os02t0635800-01	Rice	nucleus	18.23	32.23
Bra004929.1-P	Field mustard	nucleus	27.88	32.1
CDX74756	Canola	nucleus	27.88	32.0
Bra022568.1-P	Field mustard	cytosol	25.47	31.99
CDY18910	Canola	nucleus	27.61	31.69
KRH48289	Soybean	nucleus	28.15	31.34
PGSC0003DMT400094424	Potato	cytosol	20.38	31.02
KRH65181	Soybean	nucleus	27.88	30.95
Os04t0194600-01	Rice	plastid	14.48	30.68
Solyc03g006800.1.1	Tomato	nucleus	26.27	30.06
KRH57263	Soybean	nucleus	27.61	29.77
KRH03994	Soybean	nucleus	26.81	29.41
PGSC0003DMT400088049	Potato	cytosol	20.91	28.89
AT2G45680.1	Thale cress	cytosol	27.35	28.65
PGSC0003DMT400062327	Potato	nucleus	27.35	27.87
Os09t0521300-00	Rice	nucleus	27.08	26.51
VIT_02s0025g04590.t01	Wine grape	nucleus	28.69	26.03
Solyc08g080150.1.1	Tomato	nucleus	25.74	25.95
PGSC0003DMT400058534	Potato	nucleus	25.47	25.4
Os06t0226700-01	Rice	nucleus	23.86	23.0
Os01t0924400-01	Rice	nucleus	19.03	22.4
Os12t0173300-00	Rice	nucleus	24.93	22.25
Os02t0747400-01	Rice	nucleus	24.4	22.2
Os11t0175700-00	Rice	nucleus, plastid	24.13	22.17

Protein Annotations

MapMan:15.5.19	EntrezGene:4346214	EMBL:AK060536	EMBL:AK119660	ProteinID:BAD09732.1	ProteinID:BAF24323.1
ProteinID:BAT06528.1	EMBL:D87261	ProteinID:EAZ43537.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR017887	EnsemblPlantsGene:Os08g0544800	EnsemblPlants:Os08t0544800-01	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF19	UniProt:Q6ZBH6	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000023AEFD
RefSeq:XP_015648330.1	SEG:seg	:	:	:	:

Description

PROLIFERATING CELL FACTOR 2, PROMOTER BINDING FACTOR2PCF2. (Os08t0544800-01)

Coordinates

chr8:-:27296219..27297834

Molecular Weight (calculated)

38502.9 Da

IEP (calculated)

5.073

GRAVY (calculated)

-0.417

Length

373 amino acids

Sequence
(BLAST)

001: MEAQAQDKAE EGEEEGTRQQ HAQAGPVGAA GGGGGGGAAA VAMSAIPMNS WLVPKPEPVE FFGGMAMVRK PPPRNRDRHT KVEGRGRRIR MPAACAARIF
101: QLTRELGHKS DGETIRWLLQ QSEPAIIAAT GTGTVPAIAT TVDGVLRIPT QSSSSSGPAS SAVVDGEESS AKRRRKLQPT RAVAGASPLA TAAPAAYYPV
201: IADPLLQGSG GAAISVPSGL APITATGAPQ GLVPVFAVPA TGSPAVAGGN RMIPQATAVW MVPQPAGAAG AGNQPTQFWA IQSAPQLVNF AGAQFPTAIN
301: VADFQQQQQQ QPVSTTIVQN SNSGEHMHFS GADSHEQQRR GRKEGNSGGV VDHPEEDEDD DDDEPVSDSS PEE

Best Arabidopsis Sequence Match ( AT2G45680.1 )
(BLAST)

001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH

Arabidopsis Description

TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.