Factsheet for PGSC0003DMT400058534

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080150.1.1	Tomato	nucleus	88.77	89.73
KRH57263	Soybean	nucleus	44.65	48.27
KRH03994	Soybean	nucleus	43.85	48.24
VIT_02s0025g04590.t01	Wine grape	nucleus	51.87	47.2
PGSC0003DMT400062327	Potato	nucleus	41.71	42.62
GSMUA_Achr3P12320_001	Banana	cytosol	18.45	34.16
PGSC0003DMT400088049	Potato	cytosol	22.73	31.48
PGSC0003DMT400094424	Potato	cytosol	20.59	31.43
GSMUA_Achr4P27220_001	Banana	nucleus	17.91	30.45
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	25.4	29.87
GSMUA_Achr11P...	Banana	nucleus	17.91	29.65
PGSC0003DMT400052203	Potato	nucleus	17.38	28.02
Zm00001d031725_P001	Maize	nucleus	26.2	28.0
TraesCS4A01G355900.1	Wheat	nucleus	21.93	27.7
GSMUA_Achr8P00050_001	Banana	cytoskeleton, cytosol, peroxisome	25.13	27.41
PGSC0003DMT400055541	Potato	plastid	14.71	27.36
OQU80770	Sorghum	nucleus	26.2	27.3
GSMUA_Achr5P03320_001	Banana	cytosol	13.37	26.45
TraesCS5D01G516300.1	Wheat	nucleus	24.06	26.16
TraesCS5B01G516200.1	Wheat	cytosol, nucleus, peroxisome	24.33	26.07
Os08t0544800-01	Rice	nucleus	25.4	25.47
PGSC0003DMT400090661	Potato	nucleus	18.72	25.09
HORVU5Hr1G117990.1	Barley	cytosol, mitochondrion, nucleus	24.87	24.8
PGSC0003DMT400095626	Potato	plastid	16.84	22.5
PGSC0003DMT400083148	Potato	nucleus	23.53	21.46
PGSC0003DMT400067150	Potato	nucleus, plastid	18.45	21.1
PGSC0003DMT400001613	Potato	nucleus	22.46	20.29
PGSC0003DMT400008728	Potato	nucleus	20.05	20.22
HORVU5Hr1G080210.1	Barley	cytosol	14.71	20.15
Zm00001d006165_P001	Maize	nucleus	17.65	20.0
EER99208	Sorghum	nucleus	17.38	19.94
TraesCS5B01G310000.1	Wheat	cytosol, nucleus, peroxisome	17.11	18.88
TraesCS5D01G316300.1	Wheat	nucleus	16.84	18.86
TraesCS5A01G309300.1	Wheat	cytosol, nucleus, peroxisome	16.84	18.64
PGSC0003DMT400023981	Potato	nucleus	18.72	17.99
Os09t0521300-00	Rice	nucleus	17.91	17.59
PGSC0003DMT400042166	Potato	cytosol	19.25	16.07
PGSC0003DMT400064164	Potato	nucleus	20.86	14.61

Protein Annotations

EntrezGene:102601538	MapMan:15.5.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
UniProt:M1C2U0	PFAM:PF03634	EnsemblPlantsGene:PGSC0003DMG400022738	PGSC:PGSC0003DMG400022738	EnsemblPlants:PGSC0003DMT400058534	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF15	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000296E7BB	RefSeq:XP_006358853.1
SEG:seg	:	:	:	:	:

Description

TCP domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022738]

Coordinates

chr8:+:53850018..53851726

Molecular Weight (calculated)

40249.4 Da

IEP (calculated)

8.269

GRAVY (calculated)

-0.520

Length

374 amino acids

Sequence
(BLAST)

001: MSSFHDPDDD CGTSELSNDV AGDLNDRKMD GDGVADEKKL VFSAMKEEPF DSDHHTLVPS MPMPVATTAA PRRSSTKDRH TKVEGRGRRI RIPATCAARI
101: FQLTRELGHK SDGETVRWLL EHAEQSIIEA TGTGTVPAIA VSVNGTLKIP TSSPASNREI DENNPQKRRR KSSNSEFIDV GSLNRNAANV SQFAPVTTTP
201: ATIPAAAAAP PPGLLPIWTM SNGGMMVPSN AIWMIPATVP PVNVTNNNNV MVQYPQLWTP VFNLATRPIS SFVAAPTAAA TNNISGPPPI MMAGPLTIND
301: GAATSTGPKI GSNKSSMAPA SLSSSTDRNN NNKNDKPHML RDFSLEIYDR KELQFMSRSG NHQQEPQVTS SKRS

Best Arabidopsis Sequence Match ( AT2G45680.1 )
(BLAST)

001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH

Arabidopsis Description

TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.