Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g006800.1.1 | Tomato | nucleus | 83.06 | 93.25 |
| AT5G51910.1 | Thale cress | nucleus | 39.07 | 48.81 |
| CDY27099 | Canola | nucleus | 36.34 | 47.67 |
| CDX91612 | Canola | nucleus | 36.61 | 46.53 |
| Bra022568.1-P | Field mustard | cytosol | 36.34 | 44.78 |
| KRG91429 | Soybean | nucleus | 39.62 | 44.48 |
| KRH35393 | Soybean | nucleus | 37.43 | 44.05 |
| PGSC0003DMT400058534 | Potato | nucleus | 42.62 | 41.71 |
| PGSC0003DMT400088049 | Potato | cytosol | 29.23 | 39.63 |
| PGSC0003DMT400094424 | Potato | cytosol | 26.5 | 39.59 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 20.22 | 36.63 |
| GSMUA_Achr11P... | Banana | nucleus | 21.04 | 34.07 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 19.95 | 33.18 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 28.14 | 32.39 |
| PGSC0003DMT400052203 | Potato | nucleus | 18.85 | 29.74 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 15.3 | 29.63 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 23.77 | 29.39 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 27.05 | 28.86 |
| PGSC0003DMT400055541 | Potato | plastid | 15.85 | 28.86 |
| Zm00001d031725_P001 | Maize | nucleus | 27.32 | 28.57 |
| OQU80770 | Sorghum | nucleus | 27.32 | 27.86 |
| TraesCS5D01G516300.1 | Wheat | nucleus | 25.96 | 27.62 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 26.23 | 27.51 |
| Os08t0544800-01 | Rice | nucleus | 27.87 | 27.35 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 26.23 | 25.6 |
| PGSC0003DMT400090661 | Potato | nucleus | 19.13 | 25.09 |
| PGSC0003DMT400067150 | Potato | nucleus, plastid | 21.58 | 24.16 |
| EER99208 | Sorghum | nucleus | 19.95 | 22.39 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 16.67 | 22.34 |
| TraesCS5D01G316300.1 | Wheat | nucleus | 19.95 | 21.86 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 20.22 | 21.83 |
| Zm00001d006165_P001 | Maize | nucleus | 19.4 | 21.52 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 19.67 | 21.3 |
| PGSC0003DMT400095626 | Potato | plastid | 16.12 | 21.07 |
| PGSC0003DMT400023981 | Potato | nucleus | 22.13 | 20.82 |
| PGSC0003DMT400001613 | Potato | nucleus | 23.5 | 20.77 |
| PGSC0003DMT400083148 | Potato | nucleus | 23.22 | 20.73 |
| Os09t0521300-00 | Rice | nucleus | 21.04 | 20.21 |
| PGSC0003DMT400008728 | Potato | nucleus | 19.67 | 19.41 |
| PGSC0003DMT400064164 | Potato | nucleus | 26.23 | 17.98 |
| PGSC0003DMT400042166 | Potato | cytosol | 20.77 | 16.96 |
Protein Annotations
| EntrezGene:102587457 | MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008361 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0048364 | GO:GO:1900056 | InterPro:IPR017887 | UniProt:M1C8W5 |
| PFAM:PF03634 | EnsemblPlantsGene:PGSC0003DMG400024254 | PGSC:PGSC0003DMG400024254 | EnsemblPlants:PGSC0003DMT400062327 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF15 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI000296C338 | RefSeq:XP_006362699.1 | SEG:seg |
Description
TCP domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400024254]
Coordinates
chr3:-:41659283..41661219
Molecular Weight (calculated)
38628.2 Da
IEP (calculated)
4.988
GRAVY (calculated)
-0.355
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVENNQNI EQEDDEVSDS KIDPLLGDSH EYTIAAVGNV TDAEGVDPSP APSTDMVLLL KEEPEENDLR VSTSVGMNMQ LQKVEKQPVK RSSKDRHTKV
101: EGRGRRIRMP AACAARIFQL TRELGHKSEG ETIRWLLERA EPAIIAATGT GTVPAIAVSV NGTLKIPTTS PAANNEGESS TKRRKRAANS EFYEVHEASS
201: FAPVAPIAPQ GLVPVWPVGS GNGLVPTTAF TGGATFYMLP PGTNTTVGAQ LWATPIFNVP GRTISNFVSA MQPGMGYAAG GVSSVAAANE VHLSSSFCVS
301: KSDGNGDKLG NVASAMAPSS SSTGSTTTST TQMLRDFSLE IYDKRELQFM VGSGSSENDQ TSSSKS
101: EGRGRRIRMP AACAARIFQL TRELGHKSEG ETIRWLLERA EPAIIAATGT GTVPAIAVSV NGTLKIPTTS PAANNEGESS TKRRKRAANS EFYEVHEASS
201: FAPVAPIAPQ GLVPVWPVGS GNGLVPTTAF TGGATFYMLP PGTNTTVGAQ LWATPIFNVP GRTISNFVSA MQPGMGYAAG GVSSVAAANE VHLSSSFCVS
301: KSDGNGDKLG NVASAMAPSS SSTGSTTTST TQMLRDFSLE IYDKRELQFM VGSGSSENDQ TSSSKS
001: MESNHEGNAI QVIDQVTTMT HLSDPNPKTK PGMMLMKQED GYLQPVKTKP APKRPTSKDR HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
Arabidopsis Description
TCP19Transcription factor TCP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT89]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.