Factsheet for PGSC0003DMT400068374

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g061030.2.1	Tomato	nucleus	93.14	92.31
PGSC0003DMT400062232	Potato	nucleus	68.41	67.68
VIT_02s0012g00570.t01	Wine grape	nucleus	58.48	58.06
KRH77235	Soybean	nucleus	53.07	52.69
KRH04301	Soybean	nucleus	53.79	51.74
KRH28259	Soybean	nucleus	53.07	51.58
KRH57579	Soybean	nucleus	52.89	51.31
CDY44493	Canola	nucleus	44.95	50.2
Bra013277.1-P	Field mustard	nucleus	44.58	49.11
Bra013278.1-P	Field mustard	nucleus	44.58	49.11
CDX78822	Canola	nucleus	44.58	49.01
Bra012623.1-P	Field mustard	nucleus	43.32	46.78
CDX90427	Canola	nucleus	43.86	46.73
AT4G18020.1	Thale cress	nucleus	44.22	45.79
CDY01512	Canola	nucleus	42.78	45.66
Bra013279.1-P	Field mustard	nucleus	24.19	44.82
GSMUA_Achr11P...	Banana	nucleus	37.73	43.36
GSMUA_Achr2P18200_001	Banana	nucleus	39.71	39.71
PGSC0003DMT400056255	Potato	nucleus	17.15	29.97
PGSC0003DMT400024265	Potato	nucleus	18.59	22.84

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102603798	MapMan:15.5.2.3	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR001789	InterPro:IPR017930	UniProt:M1CIZ0	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072
PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400026587	PGSC:PGSC0003DMG400026587	EnsemblPlants:PGSC0003DMT400068374	PFscan:PS50110	PFscan:PS51294
PANTHER:PTHR31312	PANTHER:PTHR31312:SF2	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI000294D444	RefSeq:XP_006361171.1	RefSeq:XP_006361172.1	SEG:seg

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400026587]

Coordinates

chr6:+:44520691..44525683

Molecular Weight (calculated)

62067.1 Da

IEP (calculated)

6.616

GRAVY (calculated)

-0.637

Length

554 amino acids

Sequence
(BLAST)

001: MVCTENEFLE WKDFPKGLRV LLLDKDFNFA SQMRSRLQQM DYIVYTFCNE NDALSAISSK SEVFHVAIVE VSAGNSDGGF KFLESAKDLP TIMVSDIHSI
101: NIMMKCIALG AVEFLQKPLS DDKLRNIWQH VVHKAFHSGG KNVSESLNPV KESLLSMLEL QPVKREADNE NTNEAVVENQ KTSSSCCDKY PAPSTPQQKQ
201: GVRSVDDGDL QDHAILSNEQ DSGVHEGDTK SVETTCCDSV AETTVLADSS ERLGEAITKE EHDSAADQNM EDPIATCSRS NDNGSACSAD PNKAYGLHSS
301: SGTKANKKKM KVDWTPELHK KFVKAVEKIG IDQAIPSRIL ELMKVEGLTR HNIASHLQKF RMQRRQILPK EDEKRWRHPQ PRDSVQRTYY PHKPVMAFPN
401: YHSNHAPTAG QFYPAWIPPG GYPNGAHMWG SPYYPGWQPP ETWHWNPQPE LYADVWGCPV TPPSLGSCTP YPQNASGFHR AEGIQNRYSI IEKSVDLHPA
501: EEVIDKVVKE AINKPWLPLP LGLKPPSTES VLDALSKQGI STVPPRHHRS HRPY

Best Arabidopsis Sequence Match ( AT4G18020.9 )
(BLAST)

001: MVITANDLSK WENFPKGLKV LLLLNGCDSD GDGSSAAETR SELESMDYIV TTFTDETEAL SAVVKNPESF HIAIVEVNMS AESESFKFLE AAKDVLPTIM
101: ISTDHCITTT MKCIALGAVE FLQKPLSPEK LKNIWQHVVH KAFNDGGSNV SISLKPVKES VVSMLHLETD MTIEEKDPAP STPQLKQDSR LLDGDCQENI
201: NFSMENVNSS TEKDNMEDHQ DIGESKSVDT TNRKLDDDKV VVKEERGDSE KEEEGETGDL ISEKTDSVDI HKKEDETKPI NKSSGIKNVS GNKTSRKKVD
301: WTPELHKKFV QAVEQLGVDQ AIPSRILELM KVGTLTRHNV ASHLQKFRQH RKNILPKDDH NHRWIQSREN HRPNQRNYNV FQQQHRPVMA YPVWGLPGVY
401: PPGAIPPLWP PPLQSIGQPP PWHWKPPYPT VSGNAWGCPV GPPVTGSYIT PSNTTAGGFQ YPNGAETGFK IMPASQPDEE MLDQVVKEAI SKPWLPLPLG
501: LKPPSAESVL AELTRQGISA VPSSSCLING SHRLR

Arabidopsis Description

APRR2Two-component response regulator-like APRR2 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.