Factsheet for PGSC0003DMT400024265

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003380

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44190.1	PGSC0003DMT400003380	AT5G39610.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	89.14	74.03
VIT_12s0028g03100.t01	Wine grape	nucleus	56.76	61.69
PGSC0003DMT400056255	Potato	nucleus	43.24	61.51
KRH22338	Soybean	nucleus	56.76	58.72
KRH55898	Soybean	nucleus	54.32	57.51
KRH26988	Soybean	nucleus	54.99	56.24
KRH25644	Soybean	nucleus	52.33	55.14
GSMUA_Achr7P11040_001	Banana	nucleus	46.12	48.83
GSMUA_Achr10P...	Banana	nucleus	45.9	48.36
GSMUA_Achr2P15250_001	Banana	nucleus	44.79	47.64
AT2G20570.2	Thale cress	nucleus	45.9	47.48
Bra031129.1-P	Field mustard	nucleus	43.02	46.63
AT5G44190.1	Thale cress	nucleus	38.8	45.34
Os06t0348800-01	Rice	mitochondrion, plastid	44.79	44.4
CDY14913	Canola	nucleus	37.25	44.33
Bra036015.1-P	Field mustard	nucleus	36.36	44.32
TraesCS7A01G339800.1	Wheat	nucleus	44.35	43.38
CDY05773	Canola	nucleus	42.57	43.05
TraesCS7D01G347500.1	Wheat	nucleus	43.46	42.79
TraesCS7B01G251400.1	Wheat	nucleus	43.46	42.7
CDX94762	Canola	nucleus	35.48	42.67
Bra036482.1-P	Field mustard	nucleus	41.02	42.63
HORVU0Hr1G007770.1	Barley	nucleus	43.02	42.27
HORVU0Hr1G010940.1	Barley	nucleus	43.02	42.27
HORVU7Hr1G083690.1	Barley	nucleus	43.02	42.27
CDY22303	Canola	nucleus	35.03	42.13
GSMUA_Achr6P05850_001	Banana	nucleus	41.02	42.05
CDX96952	Canola	nucleus	34.15	41.96
Bra033726.1-P	Field mustard	nucleus	34.59	41.6
CDY31954	Canola	nucleus	40.8	40.89
EER88132	Sorghum	nucleus	42.13	40.77
Zm00001d044785_P001	Maize	nucleus	42.13	39.92
Zm00001d039260_P002	Maize	nucleus	40.35	39.48
EES02166	Sorghum	nucleus	42.57	38.63
TraesCS3D01G168200.2	Wheat	nucleus	41.91	37.57
TraesCS3A01G161000.1	Wheat	nucleus	42.35	37.52
HORVU3Hr1G032440.2	Barley	nucleus	41.69	37.15
Os01t0239000-02	Rice	nucleus	44.35	37.11
TraesCS3B01G191600.1	Wheat	nucleus	41.02	36.78
HORVU3Hr1G032410.2	Barley	nucleus	9.09	19.62
CDX81968	Canola	nucleus	43.02	19.0
PGSC0003DMT400062232	Potato	nucleus	23.5	18.93
PGSC0003DMT400068374	Potato	nucleus	22.84	18.59

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M1AJS1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400009378
PGSC:PGSC0003DMG400009378	EnsemblPlants:PGSC0003DMT400024265	PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000296C89A	SEG:seg	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009378]

Coordinates

chr7:+:49699970..49703967

Molecular Weight (calculated)

48908.8 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.551

Length

451 amino acids

Sequence
(BLAST)

001: MEGFGIGGGG GGGGGDDFPD FMGENLLDSI DFDDLFVGIN DGDILPDLEM DTEILAEFSV SSGDESDVNN YSSSNNTFIT TAIKNVERKE EIEKTGSFSA
101: SDVGSGLTTS LNQGEEIVST QKSEESTLQV NQNIITPKES DKGKKSSKNN NLPGKRKVKV DWTPELHRRF VQAVEQLGVD KAVPSRILEI MGIDCLTRHN
201: IASHLQKYRS HRKHLLAREA EAASWSHRRQ LYGGAPAVGG GGGKREMNPW PAPTIGFPPP PLPPPMAPPM PHHFRPLHVW GHPSVDQSYM HIWPKHLAPS
301: PSLQHPSPAW APPPHLHPSP PSDPSFWHPH HQRVQNSLTP GTPYFPAPIA PTRYPAVHHP VPGIPPVSSH GMYKVDHSNI GVRSTATPPA QSLPKPPCDF
401: HPSKESIDAA IGDVLSKPWL PLPLGLKPPA VDSVLGELQR QGVPKIPPTC A

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.