Factsheet for GSMUA_Achr10P26160_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P11500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44190.1	GSMUA_Achr7P11500_001	AT5G39610.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P11040_001	Banana	nucleus	69.86	70.19
GSMUA_Achr2P15250_001	Banana	nucleus	59.81	60.38
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	24.07	53.65
GSMUA_Achr6P05850_001	Banana	nucleus	54.21	52.73
PGSC0003DMT400056255	Potato	nucleus	38.78	52.37
Os06t0348800-01	Rice	mitochondrion, plastid	55.37	52.09
VIT_12s0028g03100.t01	Wine grape	nucleus	47.43	48.92
KRH26988	Soybean	nucleus	50.0	48.53
KRH22338	Soybean	nucleus	48.36	47.48
KRH25644	Soybean	nucleus	47.43	47.43
TraesCS7D01G347500.1	Wheat	nucleus	50.0	46.72
Zm00001d044785_P001	Maize	nucleus	51.87	46.64
HORVU0Hr1G010940.1	Barley	nucleus	50.0	46.62
HORVU0Hr1G007770.1	Barley	nucleus	50.0	46.62
HORVU7Hr1G083690.1	Barley	nucleus	50.0	46.62
KRH55898	Soybean	nucleus	46.26	46.48
TraesCS7A01G339800.1	Wheat	nucleus	50.0	46.42
PGSC0003DMT400024265	Potato	nucleus	48.36	45.9
EER88132	Sorghum	nucleus	49.77	45.71
TraesCS7B01G251400.1	Wheat	nucleus	48.36	45.1
Bra031129.1-P	Field mustard	nucleus	41.82	43.03
EES02166	Sorghum	nucleus	48.83	42.05
Bra036015.1-P	Field mustard	nucleus	36.22	41.89
Os01t0239000-02	Rice	nucleus	52.57	41.74
AT2G20570.2	Thale cress	nucleus	42.52	41.74
Zm00001d039260_P002	Maize	nucleus	44.86	41.65
CDY05773	Canola	nucleus	42.99	41.26
Bra036482.1-P	Field mustard	nucleus	41.82	41.24
AT5G44190.1	Thale cress	nucleus	36.68	40.67
HORVU3Hr1G032440.2	Barley	nucleus	47.9	40.51
TraesCS3D01G168200.2	Wheat	nucleus	47.2	40.16
CDY14913	Canola	nucleus	35.51	40.11
TraesCS3A01G161000.1	Wheat	nucleus	47.43	39.88
TraesCS3B01G191600.1	Wheat	nucleus	46.5	39.56
CDY31954	Canola	nucleus	41.59	39.56
CDX96952	Canola	nucleus	33.18	38.69
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	48.13	37.94
CDY22303	Canola	nucleus	32.24	36.8
CDX94762	Canola	nucleus	32.24	36.8
Bra033726.1-P	Field mustard	nucleus	31.78	36.27
GSMUA_Achr11P...	Banana	nucleus	26.17	23.24
HORVU3Hr1G032410.2	Barley	nucleus	10.98	22.49
GSMUA_Achr2P18200_001	Banana	nucleus	25.47	19.68
CDX81968	Canola	nucleus	42.06	17.63

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G26160_001
EnsemblPlants:GSMUA_Achr10P26160_001	EnsemblPlants:GSMUA_Achr10T26160_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0RLJ0	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF3	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000296C6DB	SEG:seg	:	:

Description

myb-like DNA-binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G26160_001]

Coordinates

chr10:+:29872279..29874512

Molecular Weight (calculated)

46455.2 Da

IEP (calculated)

6.801

GRAVY (calculated)

-0.378

Length

428 amino acids

Sequence
(BLAST)

001: MLAVEPLRGS SGEDRDGAMG SFSVADVDFA DEALLEDISF GDLFLGIDHG DVLPDLELDP AEIFAEFSVG EEHSGSTTAW EAAEGMLGVD GASQDVVVAA
101: LEEHNGGRGE EVVSAMTREE SMVMPSRARP SSPDGNKGRT PSAAAAAKGS HRKRKAKVDW TPELHRRFVQ AVEQLGIDKA VPSRILELMG IDCLTRHNIA
201: SHLQKYRSHR KHLLAREAEA VSWSQRRQVY AAGAGAKRDI NPWVAPTIGF VPPTPAAPPS AVQHFRPLHV WGHPTTEAPL VHMWLRHLAP RSPTVPWAPQ
301: PPPSPPDPAY WHHHYQRGSR EGWFPRAMTQ GTPCFAPPLP TARFPAPHVP GIAPHPMYRP PPPVVTKRSS SQLHLDAHPS MESVDAAIGD VLAQPWLPLP
401: LGLKSPSMDS VLVELQKKGV QKVPPACG

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.