Factsheet for TraesCS7A01G339800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G347500.1	Wheat	nucleus	89.8	90.39
HORVU7Hr1G083690.1	Barley	nucleus	88.5	88.89
HORVU0Hr1G010940.1	Barley	nucleus	88.5	88.89
HORVU0Hr1G007770.1	Barley	nucleus	88.5	88.89
TraesCS7B01G251400.1	Wheat	nucleus	86.77	87.15
Os06t0348800-01	Rice	mitochondrion, plastid	65.51	66.37
Zm00001d044785_P001	Maize	nucleus	58.57	56.72
EER88132	Sorghum	nucleus	57.27	56.65
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	21.26	51.04
GSMUA_Achr10P...	Banana	nucleus	46.42	50.0
GSMUA_Achr7P11040_001	Banana	nucleus	45.12	48.83
GSMUA_Achr2P15250_001	Banana	nucleus	44.25	48.11
PGSC0003DMT400056255	Potato	nucleus	32.75	47.63
VIT_12s0028g03100.t01	Wine grape	nucleus	41.0	45.54
KRH22338	Soybean	nucleus	42.08	44.5
PGSC0003DMT400024265	Potato	nucleus	43.38	44.35
KRH26988	Soybean	nucleus	41.87	43.76
GSMUA_Achr6P05850_001	Banana	nucleus	41.0	42.95
KRH55898	Soybean	nucleus	39.48	42.72
KRH25644	Soybean	nucleus	38.83	41.82
CDY14913	Canola	nucleus	34.06	41.42
Bra036015.1-P	Field mustard	nucleus	32.75	40.81
Bra031129.1-P	Field mustard	nucleus	36.01	39.9
AT5G44190.1	Thale cress	nucleus	33.19	39.64
CDX96952	Canola	nucleus	31.45	39.51
AT2G20570.2	Thale cress	nucleus	36.44	38.53
TraesCS3A01G161000.1	Wheat	nucleus	42.08	38.11
CDX94762	Canola	nucleus	30.15	37.07
CDY22303	Canola	nucleus	30.15	37.07
CDY05773	Canola	nucleus	35.79	37.0
Bra036482.1-P	Field mustard	nucleus	34.49	36.64
Bra033726.1-P	Field mustard	nucleus	29.72	36.53
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	42.95	36.46
CDY31954	Canola	nucleus	34.49	35.33
CDX81968	Canola	nucleus	35.79	16.16

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010638
GO:GO:0016043	GO:GO:0045893	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF3	InterPro:SANT/Myb	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	EnsemblPlantsGene:TraesCS7A01G339800	EnsemblPlants:TraesCS7A01G339800.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7A:+:497860159..497863497

Molecular Weight (calculated)

49176.3 Da

IEP (calculated)

5.264

GRAVY (calculated)

-0.319

Length

461 amino acids

Sequence
(BLAST)

001: MLAVSSARCL ADDAVEQCAE AAPVETVGGA VVVADLDIDF DFTVDDIDFG DFFLRLEDGD ALPDLEVDPA DIFTDLEAAA AGVEELQDQQ VPCAELLAAV
101: EDVGSVSSAG GVIAVENAAF AEAGLGDGKR GCSQAEVDES MGGGDRPVVP DAKSPSSTTS SSTEAESRHK SSSKNSHGKK KAKVDWTPEL HRRFVQAVEQ
201: LGIDKAVPSR ILEIMGINSL TRHNIASHLQ KYRSHRKHMI AREAEAASWT QRRQMYAAGG PAAAVKRQDS NIWTVPTIGF APAHPPPPPP PSPAAMQHYV
301: RPLHVWGHPT MDSPRMPMWP RHPMPRAPMP AWAPPPPPPS DPAFWHHPYM RGPAAYMPTH GTPCMAMPMA PKFPAPPVPV AMPCPVYTPP STPSALASKN
401: QQESQLQLQA QPSNESIDAA IGDVLSKPWL PLPLGLKPPS LGSVMGELER QGVANVPQAC G

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.