Factsheet for Bra033726.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025658.1-P
Bra028435.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44190.1	Bra025658.1-P	AT5G39610.1	23459204
AT5G44190.1	Bra028435.1-P	AT5G39610.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22303	Canola	nucleus	98.93	98.93
AT5G44190.1	Thale cress	nucleus	69.6	67.62
Bra036015.1-P	Field mustard	nucleus	64.0	64.86
PGSC0003DMT400056255	Potato	nucleus	34.67	41.01
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	20.53	40.1
KRH22338	Soybean	nucleus	44.0	37.84
KRH55898	Soybean	nucleus	42.93	37.79
Bra031129.1-P	Field mustard	nucleus	41.87	37.74
KRH25644	Soybean	nucleus	42.93	37.62
KRH26988	Soybean	nucleus	43.73	37.19
VIT_12s0028g03100.t01	Wine grape	nucleus	40.53	36.63
Bra036482.1-P	Field mustard	nucleus	41.07	35.48
GSMUA_Achr7P11040_001	Banana	nucleus	40.0	35.21
PGSC0003DMT400024265	Potato	nucleus	41.6	34.59
GSMUA_Achr2P15250_001	Banana	nucleus	38.4	33.96
Bra013279.1-P	Field mustard	nucleus	25.6	32.11
GSMUA_Achr10P...	Banana	nucleus	36.27	31.78
GSMUA_Achr6P05850_001	Banana	nucleus	37.07	31.59
Os06t0348800-01	Rice	mitochondrion, plastid	38.13	31.43
EER88132	Sorghum	nucleus	37.33	30.04
Zm00001d039260_P002	Maize	nucleus	36.8	29.93
TraesCS7A01G339800.1	Wheat	nucleus	36.53	29.72
TraesCS7B01G251400.1	Wheat	nucleus	36.27	29.63
HORVU7Hr1G083690.1	Barley	nucleus	36.27	29.63
HORVU0Hr1G010940.1	Barley	nucleus	36.27	29.63
HORVU0Hr1G007770.1	Barley	nucleus	36.27	29.63
TraesCS7D01G347500.1	Wheat	nucleus	36.0	29.48
HORVU3Hr1G032440.2	Barley	nucleus	39.73	29.45
TraesCS3D01G168200.2	Wheat	nucleus	38.93	29.03
Zm00001d044785_P001	Maize	nucleus	36.8	28.99
TraesCS3A01G161000.1	Wheat	nucleus	39.2	28.88
TraesCS3B01G191600.1	Wheat	nucleus	38.4	28.63
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	41.33	28.55
Os01t0239000-02	Rice	nucleus	40.27	28.01
EES02166	Sorghum	nucleus	36.8	27.77
Bra013278.1-P	Field mustard	nucleus	27.47	20.48
Bra013277.1-P	Field mustard	nucleus	27.47	20.48
Bra012623.1-P	Field mustard	nucleus	27.47	20.08
HORVU3Hr1G032410.2	Barley	nucleus	10.13	18.18

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra033726	EnsemblPlants:Bra033726.1	EnsemblPlants:Bra033726.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4EY36	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000253F6AD	SEG:seg	:	:

Description

AT5G44190 (E=8e-153) GLK2, ATGLK2, GPRI2 | GLK2 (GOLDEN2-LIKE 2); DNA binding / transcription factor/ transcription regulator

Coordinates

chrA06:-:25396497..25398510

Molecular Weight (calculated)

41346.9 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.555

Length

375 amino acids

Sequence
(BLAST)

001: MLTVSPLVVN TTPRDHYMAA DFADFTAEGL PDFTAEEGSL DVLEGIDFYD DLFIEFNGDD VLPDLEIESD VLGEYSGSGR DEEQEMEGNT SAASGTSERD
101: GGWCKPEGTD KTVRKGKRKG KKNKDCLSND NGIKKKPKVD WTPELHRKFV EAVERLGVDK AVPSRILEIM NVKSLNRHNV ASHLQKYRSH RKHLLAREAE
201: AASWNLRRHT TVAVPEGGEK LSMALPALGY PPHVTPLHQG HFRPLHVWGH PTWPKHKPNN PSSSPLRTFP IPPAVAVAPS CWPGQLPYWH LQTLYPQGYG
301: MASSNHSSIG VPTRQLGPTN PPIDIHPSNE IIDAALGDVI TKPWLPLPLG LNPPSVDGVM TELQRQGISN VPPLP

Best Arabidopsis Sequence Match ( AT5G44190.1 )
(BLAST)

001: MLTVSPAPVL IGNNSKDTYM AADFADFTTE DLPDFTTVGD FSDDLLDGID YYDDLFIGFD GDDVLPDLEI DSEILGEYSG SGRDEEQEME GNTSTASETS
101: ERDVGVCKQE GGGGGDGGFR DKTVRRGKRK GKKSKDCLSD ENDIKKKPKV DWTPELHRKF VQAVEQLGVD KAVPSRILEI MNVKSLTRHN VASHLQKYRS
201: HRKHLLAREA EAASWNLRRH ATVAVPGVGG GGKKPWTAPA LGYPPHVAPM HHGHFRPLHV WGHPTWPKHK PNTPASAHRT YPMPAIAAAP ASWPGHPPYW
301: HQQPLYPQGY GMASSNHSSI GVPTRQLGPT NPPIDIHPSN ESIDAAIGDV ISKPWLPLPL GLKPPSVDGV MTELQRQGVS NVPPLP

Arabidopsis Description

GLK2Transcription activator GLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.