Factsheet for TraesCS3D01G168200.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G161000.1	Wheat	nucleus	95.43	94.3
TraesCS3B01G191600.1	Wheat	nucleus	89.07	89.07
HORVU3Hr1G032440.2	Barley	nucleus	77.93	77.47
Os01t0239000-02	Rice	nucleus	59.24	55.29
Zm00001d039260_P002	Maize	nucleus	46.32	50.54
EES02166	Sorghum	nucleus	49.3	49.9
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	18.89	49.48
PGSC0003DMT400056255	Potato	nucleus	30.22	47.95
GSMUA_Achr7P11040_001	Banana	nucleus	40.56	47.89
GSMUA_Achr10P...	Banana	nucleus	40.16	47.2
GSMUA_Achr2P15250_001	Banana	nucleus	38.97	46.23
VIT_12s0028g03100.t01	Wine grape	nucleus	37.18	45.06
KRH22338	Soybean	nucleus	37.97	43.81
KRH25644	Soybean	nucleus	36.58	42.99
GSMUA_Achr6P05850_001	Banana	nucleus	37.38	42.73
Bra036015.1-P	Field mustard	nucleus	31.21	42.43
KRH26988	Soybean	nucleus	36.98	42.18
Bra031129.1-P	Field mustard	nucleus	34.79	42.07
CDY14913	Canola	nucleus	31.61	41.95
PGSC0003DMT400024265	Potato	nucleus	37.57	41.91
KRH55898	Soybean	nucleus	35.39	41.78
TraesCS7D01G347500.1	Wheat	nucleus	37.77	41.48
AT2G20570.2	Thale cress	nucleus	35.39	40.83
HORVU3Hr1G032410.2	Barley	nucleus	16.9	40.67
CDY22303	Canola	nucleus	29.42	39.47
CDY05773	Canola	nucleus	34.79	39.24
CDX94762	Canola	nucleus	29.22	39.2
AT5G44190.1	Thale cress	nucleus	30.02	39.12
Bra033726.1-P	Field mustard	nucleus	29.03	38.93
Bra036482.1-P	Field mustard	nucleus	33.4	38.71
CDX96952	Canola	nucleus	27.83	38.15
CDY31954	Canola	nucleus	33.6	37.56
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	36.78	34.07
CDX81968	Canola	nucleus	34.19	16.85

Protein Annotations

EnsemblPlants:TraesCS3D01G168200.2	EnsemblPlantsGene:TraesCS3D01G168200	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	InterPro:SANT/Myb
PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	PFAM:PF00249	PFscan:PS51294	SEG:seg	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	MapMan:15.5.2.3	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:142491158..142496325

Molecular Weight (calculated)

54335.3 Da

IEP (calculated)

5.965

GRAVY (calculated)

-0.470

Length

503 amino acids

Sequence
(BLAST)

001: MLEVVTLQSP NPAVFNLGDH HHVDVGFPEA TVEEDDFLLD YIDFSTCDMP FFHVDDGDDI LPDLEVDPTE LLAEFADEPA TTTVLSPAAE PAPDGCETHH
101: GDEAKTAVET ELPAEMCMEL PEGKGETKGL LSSEEKDVKQ HNDNKNNNNV GDEVCSAVTT DDYSAAVGCE NSKSSASAEG HSKMTSKPAS AAAATKSSHG
201: RRKVKVDWTP ELHRRFVQAV EQLGLDKAVP SRILELMGNE YRLTRHNIAS HLQKYRSHRK HLMAREAEAA SWTQKRQMYA AAGGPRKDAA AGGGPWVVPT
301: VGFPPPGTMP PHAGMAHHPG QPPPFCRPLH VWGHPTGVDA TLPLSPPSML PVWPRHLAPP PAWAHQPPVD PVYWHQQYNA ARKWGPQAVT QCVPPPMPPA
401: AVMQRFAAPP MPGMVPHPMY RPIPPPPSPV PQSNKVAGLQ LQLDAHPSKE SIDAAIGDVL VKPWLPLPLG LKPPSLDSVM SELHKQGIPK VPPAATTNCD
501: GAA

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.