Factsheet for TraesCS3B01G191600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G168200.2	Wheat	nucleus	89.07	89.07
TraesCS3A01G161000.1	Wheat	nucleus	87.87	86.84
HORVU3Hr1G032440.2	Barley	nucleus	78.73	78.26
Os01t0239000-02	Rice	nucleus	58.05	54.17
Zm00001d039260_P002	Maize	nucleus	46.52	50.76
EES02166	Sorghum	nucleus	48.11	48.69
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	18.29	47.92
PGSC0003DMT400056255	Potato	nucleus	29.62	47.0
GSMUA_Achr7P11040_001	Banana	nucleus	39.56	46.71
GSMUA_Achr10P...	Banana	nucleus	39.56	46.5
VIT_12s0028g03100.t01	Wine grape	nucleus	37.57	45.54
GSMUA_Achr2P15250_001	Banana	nucleus	37.77	44.81
KRH22338	Soybean	nucleus	38.17	44.04
KRH25644	Soybean	nucleus	36.38	42.76
GSMUA_Achr6P05850_001	Banana	nucleus	37.18	42.5
KRH26988	Soybean	nucleus	36.98	42.18
Bra036015.1-P	Field mustard	nucleus	30.82	41.89
CDY14913	Canola	nucleus	31.41	41.69
Bra031129.1-P	Field mustard	nucleus	34.39	41.59
KRH55898	Soybean	nucleus	34.99	41.31
PGSC0003DMT400024265	Potato	nucleus	36.78	41.02
HORVU3Hr1G032410.2	Barley	nucleus	16.9	40.67
AT2G20570.2	Thale cress	nucleus	34.99	40.37
TraesCS7B01G251400.1	Wheat	nucleus	36.78	40.3
CDY05773	Canola	nucleus	34.59	39.01
CDY22303	Canola	nucleus	29.03	38.93
AT5G44190.1	Thale cress	nucleus	29.82	38.86
CDX94762	Canola	nucleus	28.63	38.4
Bra033726.1-P	Field mustard	nucleus	28.63	38.4
Bra036482.1-P	Field mustard	nucleus	33.0	38.25
CDX96952	Canola	nucleus	27.83	38.15
CDY31954	Canola	nucleus	33.2	37.11
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	35.98	33.33
CDX81968	Canola	nucleus	33.8	16.65

Protein Annotations

EnsemblPlants:TraesCS3B01G191600.1	EnsemblPlantsGene:TraesCS3B01G191600	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	InterPro:SANT/Myb
PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	PFAM:PF00249	PFscan:PS51294	SEG:seg	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	MapMan:15.5.2.3	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:204296563..204301571

Molecular Weight (calculated)

54278.4 Da

IEP (calculated)

6.200

GRAVY (calculated)

-0.490

Length

503 amino acids

Sequence
(BLAST)

001: MLEVATLQSP NPAVFSLGEH HHVDVGFPEV TVEEDDFLLD YIDFSTCDMP FFHVDDGDDI LPDLEVDPTE LLAEFADEPA TTTVLSPAAE PAPDGCETHH
101: GGEAKTAAET ELPAEMGMEL PEGKGETKGL LSSEEKDVRQ HNDNNKNNNN VGDEVCSAVT TDDSSAVVGS ENSKSSASAE GHSKMTSKPA SAAAATKSSH
201: GRRKVKVDWT PELHRRFVQA VEQLGLDKAV PSRILELMGN EYRLTRHNIA SHLQKYRSHR KHLMAREAGA ARWTQKRQMY AAAGGPRKEA AAGGGPWVVP
301: TVGFPPPGTM AHAGMAHHPG QPPPFCRPLH VWGHPTGVDA PLPLSPPSML PVWPRHLAPP PAWAHQPPMD PVYWHQQYNA ARKWGPQAVT QCVPPTMPPA
401: PMMQRFAAPP MPGMMPHPMY RPIPPPPSPV PQSNKVAGLQ LQLDAHPSKE SIDAAIGDVL VKPWLPLPLG LKPPSLDSVM SELHKQGIPK VPPAATTNCD
501: GAA

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.