CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039260_P002	Maize	nucleus	59.15	63.77
Os01t0239000-02	Rice	nucleus	54.53	50.28
HORVU3Hr1G032440.2	Barley	nucleus	50.91	50.0
TraesCS3A01G161000.1	Wheat	nucleus	50.7	49.51
TraesCS3D01G168200.2	Wheat	nucleus	49.9	49.3
GSMUA_Achr10P...	Banana	nucleus	42.05	48.83
GSMUA_Achr7P11040_001	Banana	nucleus	41.85	48.83
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	18.71	48.44
TraesCS3B01G191600.1	Wheat	nucleus	48.69	48.11
GSMUA_Achr2P15250_001	Banana	nucleus	40.85	47.88
VIT_12s0028g03100.t01	Wine grape	nucleus	38.63	46.27
PGSC0003DMT400056255	Potato	nucleus	29.18	45.74
KRH26988	Soybean	nucleus	39.03	43.99
EER88132	Sorghum	nucleus	40.85	43.56
GSMUA_Achr6P05850_001	Banana	nucleus	38.43	43.41
KRH22338	Soybean	nucleus	38.03	43.35
PGSC0003DMT400024265	Potato	nucleus	38.63	42.57
KRH25644	Soybean	nucleus	36.42	42.29
Bra036015.1-P	Field mustard	nucleus	30.78	41.35
KRH55898	Soybean	nucleus	35.41	41.31
CDY14913	Canola	nucleus	31.19	40.9
AT5G44190.1	Thale cress	nucleus	31.19	40.16
Bra031129.1-P	Field mustard	nucleus	33.6	40.14
AT2G20570.2	Thale cress	nucleus	34.61	39.45
CDX96952	Canola	nucleus	28.77	38.96
Bra036482.1-P	Field mustard	nucleus	33.6	38.48
CDX94762	Canola	nucleus	28.97	38.4
CDY05773	Canola	nucleus	34.41	38.34
CDY22303	Canola	nucleus	28.17	37.33
Bra033726.1-P	Field mustard	nucleus	27.77	36.8
CDY31954	Canola	nucleus	33.2	36.67
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	38.23	34.99
HORVU3Hr1G032410.2	Barley	nucleus	11.67	27.75
CDX81968	Canola	nucleus	33.4	16.26

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	UniProt:C5XJI7	EnsemblPlants:EES02166	ProteinID:EES02166	ProteinID:EES02166.2
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005886
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009658	GO:GO:0009791
GO:GO:0009908	GO:GO:0009910	GO:GO:0009987	GO:GO:0010380	GO:GO:0016020	GO:GO:0016043
GO:GO:0022857	GO:GO:0044212	GO:GO:0045893	GO:GO:0055085	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF1
InterPro:SANT/Myb	EnsemblPlantsGene:SORBI_3003G002600	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00081AD612	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:303412..310415

Molecular Weight (calculated)

52943.7 Da

IEP (calculated)

6.569

GRAVY (calculated)

-0.359

Length

497 amino acids

Sequence
(BLAST)

001: MLGVSTLRSP SRSSSKADQH CGGGFVGDHH VVFPTSGGGS DCCDGFAMVD VDDNLLDYID FSCDVPFFDA DGDILPDLEV DPTELLAEFS STPPPDDLLL
101: VHVDDEAANN KPPVVPDDDV KQHHLAVVTT AAAQEEKQTC GGDEKHVAAS KQTTTEEDYS AACAGAAVSD TKSSASAAES HSKKKAAAGN KNSHGKRKVD
201: WTPELHRRFV QAVEQLGIDK AVPSRILEIM GMDCLTRHNI ASHLQKYRSH RKHLMAREAE AATWAQKRHM YAAAAGGGAP RTDAPHASRP WVVPTIGFPP
301: PAPPPFCRPL HVWGHPPHAA AAEAAAAVAA PPTPMLPVWP RHLAPPRPLP PWAHPHPPAV DPAFWHQQYN AARKWGPQAA AVTQGTPCVP PPAAMLPRFP
401: VPGMVPHPMY RPTMVPPPPP PPPPQPSTKL AELQLELDTH PSKESIDAAI GDVLVKPWLP LPLGLKPPSL DSVMSELHKQ GVPSIPPAAT ATAIATG

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.