CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55898	Soybean	nucleus	81.07	81.46
KRH26988	Soybean	nucleus	61.92	60.09
KRH22338	Soybean	nucleus	60.75	59.63
VIT_12s0028g03100.t01	Wine grape	nucleus	53.97	55.66
PGSC0003DMT400056255	Potato	nucleus	40.42	54.57
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	24.3	54.17
PGSC0003DMT400024265	Potato	nucleus	55.14	52.33
GSMUA_Achr2P15250_001	Banana	nucleus	47.9	48.35
GSMUA_Achr7P11040_001	Banana	nucleus	47.43	47.65
GSMUA_Achr10P...	Banana	nucleus	47.43	47.43
AT5G44190.1	Thale cress	nucleus	40.89	45.34
CDX94762	Canola	nucleus	39.02	44.53
Bra036015.1-P	Field mustard	nucleus	38.32	44.32
Bra031129.1-P	Field mustard	nucleus	42.99	44.23
CDY14913	Canola	nucleus	38.78	43.8
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	54.91	43.28
CDY22303	Canola	nucleus	37.62	42.93
Bra033726.1-P	Field mustard	nucleus	37.62	42.93
AT2G20570.2	Thale cress	nucleus	42.99	42.2
GSMUA_Achr6P05850_001	Banana	nucleus	43.22	42.05
CDX96952	Canola	nucleus	35.75	41.69
Bra036482.1-P	Field mustard	nucleus	42.06	41.47
Os06t0348800-01	Rice	mitochondrion, plastid	43.69	41.1
CDY05773	Canola	nucleus	42.76	41.03
CDY31954	Canola	nucleus	41.82	39.78
TraesCS7D01G347500.1	Wheat	nucleus	42.52	39.74
TraesCS7A01G339800.1	Wheat	nucleus	41.82	38.83
TraesCS7B01G251400.1	Wheat	nucleus	41.59	38.78
HORVU7Hr1G083690.1	Barley	nucleus	41.12	38.34
HORVU0Hr1G007770.1	Barley	nucleus	41.12	38.34
HORVU0Hr1G010940.1	Barley	nucleus	41.12	38.34
EER88132	Sorghum	nucleus	41.36	37.98
Zm00001d039260_P002	Maize	nucleus	40.89	37.96
Zm00001d044785_P001	Maize	nucleus	42.06	37.82
HORVU3Hr1G032440.2	Barley	nucleus	44.16	37.35
TraesCS3A01G161000.1	Wheat	nucleus	44.16	37.13
Os01t0239000-02	Rice	nucleus	46.5	36.92
TraesCS3D01G168200.2	Wheat	nucleus	42.99	36.58
EES02166	Sorghum	nucleus	42.29	36.42
TraesCS3B01G191600.1	Wheat	nucleus	42.76	36.38
HORVU3Hr1G032410.2	Barley	nucleus	9.81	20.1
KRH04301	Soybean	nucleus	25.7	19.1
KRH57579	Soybean	nucleus	25.23	18.91
KRH77235	Soybean	nucleus	24.53	18.82
KRH28259	Soybean	nucleus	25.0	18.77
CDX81968	Canola	nucleus	43.46	18.22

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100777595	MapMan:15.5.2.3	EMBL:ACUP02007307	EnsemblPlantsGene:GLYMA_12G117700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1LS71	InterPro:IPR017930	EnsemblPlants:KRH25644
ProteinID:KRH25644	ProteinID:KRH25644.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000233C8A2
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:11954597..11959925

Molecular Weight (calculated)

46689.3 Da

IEP (calculated)

6.235

GRAVY (calculated)

-0.495

Length

428 amino acids

Sequence
(BLAST)

001: MLAVSPLRSI KDEKNQGEME GNFSMATTTT TGDVDFGDLS EGNLLESINF DDLFVGIDIN GDVLPDLEMF HEFSVDVNTG EESSEMNSSA DNSKVENDQN
101: VMINTGPKKE EEEDKASCNS SGQDLGSIRG EEIVSKRDES VVVNPAPKDG GKGRKSSSAQ SKNNNSSNNA QGKRKVKVDW TPELHRRFVQ AVEQLGVDKA
201: VPSRILEIMG IDCLTRHNIA SHLQKYRSHR KHLLAREAEA ASWSQRRQLY AGGGKREGNP WLAPIMGFPP MTTPMHHFRP LHVWGHPSMS LVHMWPKHLS
301: NSPPLLWPLS PPAVPPQDPS FWQQLAPNAL IPGTACFPQP LTPTRFGSAP VPGIPPHAMY KADHGIGVLG PSSLLDFHPS KECIDAAIGD VLSKPWLPLP
401: IGLKAPALDS VMSELQKQGI PNIPPSSA

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.