Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G44190.1 | CDX67433 | AT5G39610.1 | 23459204 |
| AT5G44190.1 | CDX74442 | AT5G39610.1 | 23459204 |
| AT5G44190.1 | CDY30258 | AT5G39610.1 | 23459204 |
| AT5G44190.1 | CDY37008 | AT5G39610.1 | 23459204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14913 | Canola | nucleus | 89.1 | 86.28 |
| Bra036015.1-P | Field mustard | nucleus | 77.38 | 76.76 |
| AT5G44190.1 | Thale cress | nucleus | 69.75 | 66.32 |
| CDY22303 | Canola | nucleus | 67.03 | 65.6 |
| CDX94762 | Canola | nucleus | 64.58 | 63.2 |
| Solyc10g008160.2.1 | Tomato | mitochondrion, nucleus | 22.34 | 42.71 |
| PGSC0003DMT400056255 | Potato | nucleus | 33.52 | 38.8 |
| KRH22338 | Soybean | nucleus | 43.6 | 36.7 |
| KRH55898 | Soybean | nucleus | 41.69 | 35.92 |
| VIT_12s0028g03100.t01 | Wine grape | nucleus | 40.6 | 35.9 |
| KRH25644 | Soybean | nucleus | 41.69 | 35.75 |
| GSMUA_Achr7P11040_001 | Banana | nucleus | 41.42 | 35.68 |
| KRH26988 | Soybean | nucleus | 42.51 | 35.37 |
| GSMUA_Achr2P15250_001 | Banana | nucleus | 40.33 | 34.91 |
| PGSC0003DMT400024265 | Potato | nucleus | 41.96 | 34.15 |
| GSMUA_Achr10P... | Banana | nucleus | 38.69 | 33.18 |
| CDY05773 | Canola | nucleus | 39.78 | 32.74 |
| GSMUA_Achr6P05850_001 | Banana | nucleus | 38.69 | 32.27 |
| Os06t0348800-01 | Rice | mitochondrion, plastid | 39.51 | 31.87 |
| TraesCS7B01G251400.1 | Wheat | nucleus | 39.78 | 31.81 |
| TraesCS7D01G347500.1 | Wheat | nucleus | 39.51 | 31.66 |
| CDY31954 | Canola | nucleus | 38.69 | 31.56 |
| TraesCS7A01G339800.1 | Wheat | nucleus | 39.51 | 31.45 |
| EER88132 | Sorghum | nucleus | 39.78 | 31.33 |
| HORVU0Hr1G007770.1 | Barley | nucleus | 38.42 | 30.72 |
| HORVU0Hr1G010940.1 | Barley | nucleus | 38.42 | 30.72 |
| HORVU7Hr1G083690.1 | Barley | nucleus | 38.42 | 30.72 |
| Zm00001d039260_P002 | Maize | nucleus | 37.6 | 29.93 |
| Zm00001d044785_P001 | Maize | nucleus | 38.69 | 29.83 |
| EES02166 | Sorghum | nucleus | 38.96 | 28.77 |
| Solyc07g053630.2.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 42.51 | 28.73 |
| TraesCS3B01G191600.1 | Wheat | nucleus | 38.15 | 27.83 |
| TraesCS3D01G168200.2 | Wheat | nucleus | 38.15 | 27.83 |
| TraesCS3A01G161000.1 | Wheat | nucleus | 38.42 | 27.7 |
| HORVU3Hr1G032440.2 | Barley | nucleus | 38.15 | 27.67 |
| Os01t0239000-02 | Rice | nucleus | 39.24 | 26.72 |
| HORVU3Hr1G032410.2 | Barley | nucleus | 10.9 | 19.14 |
| CDX78822 | Canola | nucleus | 26.16 | 19.05 |
| CDY44493 | Canola | nucleus | 25.61 | 18.95 |
| CDY01512 | Canola | nucleus | 26.16 | 18.5 |
| CDX90427 | Canola | nucleus | 25.34 | 17.88 |
| CDX81968 | Canola | nucleus | 41.69 | 14.99 |
Protein Annotations
| EnsemblPlants:CDX96952 | EnsemblPlantsGene:GSBRNA2T00103882001 | Gene3D:1.10.10.60 | GO:A0A078E7B3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants |
| PANTHER:PTHR31312 | PANTHER:PTHR31312:SF1 | PFscan:PS51294 | ProteinID:CDX96952 | ProteinID:CDX96952.1 | SEG:seg |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EEF4D2 | MapMan:15.5.2.3 | : | : |
Description
BnaC02g30900D
Coordinates
chrLK031896:+:849608..853103
Molecular Weight (calculated)
40777.3 Da
IEP (calculated)
7.908
GRAVY (calculated)
-0.629
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSPLIVNTT SRENYMAADF SDFTAEGLPD FTMVGEGSLY LLEGIDYYDD FFIGFDGDDA LPDLKIDCDI LGEYSGSWRD DEQEMEGNTS TKSETSERDG
101: GMVKLDGGAR TPKTVRRGKR KVKKNKDCLS LDNEIKKKAK VDWTPELHRN FVQAVEQLGI DKAVPSLTRH NVANHLQKYR SYRKHLLARE AEAANWNLRR
201: HATVAVAGLG GKKPWKAPAL GYPPNVTPMH HGHFRPLHVL GHPTWPKHKH NHPSSSTHRT YPIPAVAAPP SSWPGQPPYW HQQALYPQGY GMATPNHSII
301: GVPTRQLSPT TNPPIDIHPS NESIDAAIGD VITKPWLPLP LGLKPPSVDG VMTELQRQGV TNVPHLP
101: GMVKLDGGAR TPKTVRRGKR KVKKNKDCLS LDNEIKKKAK VDWTPELHRN FVQAVEQLGI DKAVPSLTRH NVANHLQKYR SYRKHLLARE AEAANWNLRR
201: HATVAVAGLG GKKPWKAPAL GYPPNVTPMH HGHFRPLHVL GHPTWPKHKH NHPSSSTHRT YPIPAVAAPP SSWPGQPPYW HQQALYPQGY GMATPNHSII
301: GVPTRQLSPT TNPPIDIHPS NESIDAAIGD VITKPWLPLP LGLKPPSVDG VMTELQRQGV TNVPHLP
001: MLTVSPAPVL IGNNSKDTYM AADFADFTTE DLPDFTTVGD FSDDLLDGID YYDDLFIGFD GDDVLPDLEI DSEILGEYSG SGRDEEQEME GNTSTASETS
101: ERDVGVCKQE GGGGGDGGFR DKTVRRGKRK GKKSKDCLSD ENDIKKKPKV DWTPELHRKF VQAVEQLGVD KAVPSRILEI MNVKSLTRHN VASHLQKYRS
201: HRKHLLAREA EAASWNLRRH ATVAVPGVGG GGKKPWTAPA LGYPPHVAPM HHGHFRPLHV WGHPTWPKHK PNTPASAHRT YPMPAIAAAP ASWPGHPPYW
301: HQQPLYPQGY GMASSNHSSI GVPTRQLGPT NPPIDIHPSN ESIDAAIGDV ISKPWLPLPL GLKPPSVDGV MTELQRQGVS NVPPLP
101: ERDVGVCKQE GGGGGDGGFR DKTVRRGKRK GKKSKDCLSD ENDIKKKPKV DWTPELHRKF VQAVEQLGVD KAVPSRILEI MNVKSLTRHN VASHLQKYRS
201: HRKHLLAREA EAASWNLRRH ATVAVPGVGG GGKKPWTAPA LGYPPHVAPM HHGHFRPLHV WGHPTWPKHK PNTPASAHRT YPMPAIAAAP ASWPGHPPYW
301: HQQPLYPQGY GMASSNHSSI GVPTRQLGPT NPPIDIHPSN ESIDAAIGDV ISKPWLPLPL GLKPPSVDGV MTELQRQGVS NVPPLP
Arabidopsis Description
GLK2Transcription activator GLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.