Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013277.1-P | Field mustard | nucleus | 98.21 | 98.41 |
| Bra013278.1-P | Field mustard | nucleus | 98.21 | 98.41 |
| CDY44493 | Canola | nucleus | 92.86 | 94.35 |
| CDY01512 | Canola | nucleus | 76.19 | 73.99 |
| CDX90427 | Canola | nucleus | 75.4 | 73.08 |
| AT4G18020.1 | Thale cress | nucleus | 73.61 | 69.35 |
| VIT_02s0012g00570.t01 | Wine grape | nucleus | 53.77 | 48.57 |
| KRH77235 | Soybean | nucleus | 51.19 | 46.24 |
| KRH04301 | Soybean | nucleus | 52.78 | 46.18 |
| KRH57579 | Soybean | nucleus | 52.18 | 46.06 |
| KRH28259 | Soybean | nucleus | 51.59 | 45.61 |
| PGSC0003DMT400068374 | Potato | nucleus | 49.01 | 44.58 |
| Solyc06g061030.2.1 | Tomato | nucleus | 48.41 | 43.65 |
| Solyc08g077230.2.1 | Tomato | nucleus | 47.22 | 42.5 |
| PGSC0003DMT400062232 | Potato | nucleus | 47.02 | 42.32 |
| GSMUA_Achr11P... | Banana | nucleus | 40.28 | 42.12 |
| GSMUA_Achr2P18200_001 | Banana | nucleus | 44.44 | 40.43 |
| CDY22303 | Canola | nucleus | 20.83 | 28.0 |
| CDX94762 | Canola | nucleus | 20.63 | 27.73 |
| CDY14913 | Canola | nucleus | 20.83 | 27.7 |
| CDX96952 | Canola | nucleus | 19.05 | 26.16 |
| CDY05773 | Canola | nucleus | 21.23 | 23.99 |
| CDY31954 | Canola | nucleus | 21.23 | 23.78 |
| CDX81968 | Canola | nucleus | 19.05 | 9.4 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | Gene3D:3.40.50.2300 | GO:A0A078CQ18 | EnsemblPlants:CDX78822 | ProteinID:CDX78822 |
| ProteinID:CDX78822.1 | InterPro:CheY-like_superfamily | GO:GO:0000160 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00131294001 |
| InterPro:Homeobox-like_sf | InterPro:IPR001789 | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00072 |
| PFAM:PF00249 | PFscan:PS50110 | PFscan:PS51294 | PANTHER:PTHR31312 | PANTHER:PTHR31312:SF2 | InterPro:SANT/Myb |
| SUPFAM:SSF46689 | SUPFAM:SSF52172 | InterPro:Sig_transdc_resp-reg_receiver | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE6AA1 | SEG:seg |
Description
BnaA01g08890D
Coordinates
chrLK031816:-:270136..274040
Molecular Weight (calculated)
56335.7 Da
IEP (calculated)
6.607
GRAVY (calculated)
-0.611
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFTSNDISK WENFPKGLRV LLLDCGDGIS AAETRSKLES MDYIVTTFTD GTEALSAVFK SLESFHIAIV EVNTSDENES FKFLEAAKDH LPTIMISNDH
101: CITTTMKCIA LGAVEFLQKP LSPEKLKNIW QHVVHKAFND GGTDVSESLK PVKESVVSML HLDTDMTIDE KDSAPLTPQL KQVSRLLDGG DRQENINSST
201: EKENMEDQDI GESKSVDTTN HDDNVIVKEE KLDGETGDTK SEKTDSVKFQ KKEDETTKHN NKSTGIKNLS GNKPSRKKVD WTQELHKKFV QAVDQLGVDQ
301: AIPSRILELM KVDGLTRHNV ASHLQQKFRM HRRNILPKED HNHRWIQSRE NHRQIQRQYN GFQQQHRPVM AYPVWGLPGV HPPGAVPPLW PPPLQSSGQL
401: PPWHWRPPYP TVNVNAWGCP IVPPVTGPFS SPTVTGTFST PPATQLDEEM VDQVVKEAIS KPWLPLPLGL KPPSAESVLA ELSRQGISAV PSSSSSINGS
501: RRLR
101: CITTTMKCIA LGAVEFLQKP LSPEKLKNIW QHVVHKAFND GGTDVSESLK PVKESVVSML HLDTDMTIDE KDSAPLTPQL KQVSRLLDGG DRQENINSST
201: EKENMEDQDI GESKSVDTTN HDDNVIVKEE KLDGETGDTK SEKTDSVKFQ KKEDETTKHN NKSTGIKNLS GNKPSRKKVD WTQELHKKFV QAVDQLGVDQ
301: AIPSRILELM KVDGLTRHNV ASHLQQKFRM HRRNILPKED HNHRWIQSRE NHRQIQRQYN GFQQQHRPVM AYPVWGLPGV HPPGAVPPLW PPPLQSSGQL
401: PPWHWRPPYP TVNVNAWGCP IVPPVTGPFS SPTVTGTFST PPATQLDEEM VDQVVKEAIS KPWLPLPLGL KPPSAESVLA ELSRQGISAV PSSSSSINGS
501: RRLR
001: MVITANDLSK WENFPKGLKV LLLLNGCDSD GDGSSAAETR SELESMDYIV TTFTDETEAL SAVVKNPESF HIAIVEVNMS AESESFKFLE AAKDVLPTIM
101: ISTDHCITTT MKCIALGAVE FLQKPLSPEK LKNIWQHVVH KAFNDGGSNV SISLKPVKES VVSMLHLETD MTIEEKDPAP STPQLKQDSR LLDGDCQENI
201: NFSMENVNSS TEKDNMEDHQ DIGESKSVDT TNRKLDDDKV VVKEERGDSE KEEEGETGDL ISEKTDSVDI HKKEDETKPI NKSSGIKNVS GNKTSRKKVD
301: WTPELHKKFV QAVEQLGVDQ AIPSRILELM KVGTLTRHNV ASHLQKFRQH RKNILPKDDH NHRWIQSREN HRPNQRNYNV FQQQHRPVMA YPVWGLPGVY
401: PPGAIPPLWP PPLQSIGQPP PWHWKPPYPT VSGNAWGCPV GPPVTGSYIT PSNTTAGGFQ YPNGAETGFK IMPASQPDEE MLDQVVKEAI SKPWLPLPLG
501: LKPPSAESVL AELTRQGISA VPSSSCLING SHRLR
101: ISTDHCITTT MKCIALGAVE FLQKPLSPEK LKNIWQHVVH KAFNDGGSNV SISLKPVKES VVSMLHLETD MTIEEKDPAP STPQLKQDSR LLDGDCQENI
201: NFSMENVNSS TEKDNMEDHQ DIGESKSVDT TNRKLDDDKV VVKEERGDSE KEEEGETGDL ISEKTDSVDI HKKEDETKPI NKSSGIKNVS GNKTSRKKVD
301: WTPELHKKFV QAVEQLGVDQ AIPSRILELM KVGTLTRHNV ASHLQKFRQH RKNILPKDDH NHRWIQSREN HRPNQRNYNV FQQQHRPVMA YPVWGLPGVY
401: PPGAIPPLWP PPLQSIGQPP PWHWKPPYPT VSGNAWGCPV GPPVTGSYIT PSNTTAGGFQ YPNGAETGFK IMPASQPDEE MLDQVVKEAI SKPWLPLPLG
501: LKPPSAESVL AELTRQGISA VPSSSCLING SHRLR
Arabidopsis Description
APRR2Two-component response regulator-like APRR2 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.