Factsheet for VIT_02s0012g00570.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77235	Soybean	nucleus	64.87	64.87
KRH28259	Soybean	nucleus	63.8	62.46
KRH57579	Soybean	nucleus	63.26	61.82
KRH04301	Soybean	nucleus	63.44	61.46
PGSC0003DMT400068374	Potato	nucleus	58.06	58.48
PGSC0003DMT400062232	Potato	nucleus	58.42	58.21
Solyc06g061030.2.1	Tomato	nucleus	58.24	58.14
Solyc08g077230.2.1	Tomato	nucleus	56.27	56.07
CDY44493	Canola	nucleus	49.1	55.24
Bra013277.1-P	Field mustard	nucleus	48.92	54.27
Bra013278.1-P	Field mustard	nucleus	48.92	54.27
CDX78822	Canola	nucleus	48.57	53.77
AT4G18020.1	Thale cress	nucleus	49.46	51.59
CDX90427	Canola	nucleus	48.03	51.54
Bra012623.1-P	Field mustard	nucleus	47.31	51.46
CDY01512	Canola	nucleus	47.85	51.45
GSMUA_Achr11P...	Banana	nucleus	43.01	49.79
GSMUA_Achr2P18200_001	Banana	nucleus	46.06	46.39
Bra013279.1-P	Field mustard	nucleus	24.73	46.15
VIT_12s0028g03100.t01	Wine grape	nucleus	19.53	26.27

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250547	wikigene:100250547	MapMan:15.5.2.3	Gene3D:3.40.50.2300	EMBL:AM443941
ProteinID:CAN71929	ProteinID:CAN71929.1	ProteinID:CCB57937	ProteinID:CCB57937.1	InterPro:CheY-like_superfamily	UniProt:F6HTC7
EMBL:FN596247	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	EntrezGene:LOC100250547	wikigene:LOC100250547
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249	PFscan:PS50110	PFscan:PS51294
PANTHER:PTHR31312	PANTHER:PTHR31312:SF2	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	TIGR:TC63295	TIGRFAMs:TIGR01557	UniParc:UPI00021082EE	ArrayExpress:VIT_02s0012g00570	EnsemblPlantsGene:VIT_02s0012g00570
EnsemblPlants:VIT_02s0012g00570.t01	unigene:Vvi.5444	RefSeq:XP_002279150	RefSeq:XP_002279150.1	:	:

Description

No Description!

Coordinates

chr2:-:6442242..6448260

Molecular Weight (calculated)

61959.0 Da

IEP (calculated)

6.149

GRAVY (calculated)

-0.648

Length

558 amino acids

Sequence
(BLAST)

001: MVCTANDLQE WKDFPKGLRV LLLDDDTTSA AEIRSKLEEM DYIVSTFCNE NEALSAISSK PESFHVAIVE VSTGNNGSFK FLETAKDLPT IMISSIHCLS
101: TMMKCIALGA VEFLRKPLSE DKLRNIWQHV VHKAFNAGGS VLPESLKPVK ESVASMLQLQ MENEEPRNES SAETLNVSNV HENDHMQSAG TDKYPAPSTP
201: QLKQGGRSLD DGDCLDQTNC STEKESGEQD GESKSVETTC GTSVAEVTAQ VSPPQGLGES VIKEEDDSAD GCKSESNMSP HPQNKDSLSE FGGDARNPRK
301: ASGVHSPCGT RANRKKMKVD WTPELHKKFV QAVEQLGVDQ AIPSRILELM KVEGLTRHNV ASHLQQKYRM HRRHILPKED DRRWPHQRDP MQRNYYPQKP
401: VMAFPPYHSS HTLPAAQLYP VWGQPSSHPA QMWSTPGYHT WQPAESWIWK PYPGMNADAW GCPVMTPTHT PCSSFPQNPS GFDHNNGSGI YNTGIPQSPI
501: DLYPAEELID RVVKEAISKP WMPLPLGLKP PATESVLAEL SRQGISTIPP HINTPRPY

Best Arabidopsis Sequence Match ( AT4G18020.9 )
(BLAST)

001: MVITANDLSK WENFPKGLKV LLLLNGCDSD GDGSSAAETR SELESMDYIV TTFTDETEAL SAVVKNPESF HIAIVEVNMS AESESFKFLE AAKDVLPTIM
101: ISTDHCITTT MKCIALGAVE FLQKPLSPEK LKNIWQHVVH KAFNDGGSNV SISLKPVKES VVSMLHLETD MTIEEKDPAP STPQLKQDSR LLDGDCQENI
201: NFSMENVNSS TEKDNMEDHQ DIGESKSVDT TNRKLDDDKV VVKEERGDSE KEEEGETGDL ISEKTDSVDI HKKEDETKPI NKSSGIKNVS GNKTSRKKVD
301: WTPELHKKFV QAVEQLGVDQ AIPSRILELM KVGTLTRHNV ASHLQKFRQH RKNILPKDDH NHRWIQSREN HRPNQRNYNV FQQQHRPVMA YPVWGLPGVY
401: PPGAIPPLWP PPLQSIGQPP PWHWKPPYPT VSGNAWGCPV GPPVTGSYIT PSNTTAGGFQ YPNGAETGFK IMPASQPDEE MLDQVVKEAI SKPWLPLPLG
501: LKPPSAESVL AELTRQGISA VPSSSCLING SHRLR

Arabidopsis Description

APRR2Two-component response regulator-like APRR2 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.