Factsheet for VIT_12s0028g03100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	extracellular, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26988	Soybean	nucleus	64.1	60.32
KRH22338	Soybean	nucleus	63.13	60.09
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	27.71	59.9
PGSC0003DMT400056255	Potato	nucleus	43.86	57.41
KRH55898	Soybean	nucleus	58.55	57.04
PGSC0003DMT400024265	Potato	nucleus	61.69	56.76
KRH25644	Soybean	nucleus	55.66	53.97
GSMUA_Achr2P15250_001	Banana	nucleus	50.36	49.29
GSMUA_Achr7P11040_001	Banana	nucleus	49.4	48.12
GSMUA_Achr10P...	Banana	nucleus	48.92	47.43
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	61.45	46.96
AT2G20570.2	Thale cress	nucleus	48.19	45.87
Bra031129.1-P	Field mustard	nucleus	44.82	44.71
AT5G44190.1	Thale cress	nucleus	40.96	44.04
Os06t0348800-01	Rice	mitochondrion, plastid	47.95	43.74
Bra036015.1-P	Field mustard	nucleus	38.8	43.51
CDY05773	Canola	nucleus	46.75	43.5
Bra036482.1-P	Field mustard	nucleus	45.06	43.09
GSMUA_Achr6P05850_001	Banana	nucleus	44.34	41.82
CDY14913	Canola	nucleus	38.07	41.69
HORVU0Hr1G007770.1	Barley	nucleus	45.54	41.18
HORVU0Hr1G010940.1	Barley	nucleus	45.54	41.18
HORVU7Hr1G083690.1	Barley	nucleus	45.54	41.18
TraesCS7A01G339800.1	Wheat	nucleus	45.54	41.0
CDY31954	Canola	nucleus	44.34	40.89
CDX96952	Canola	nucleus	35.9	40.6
Bra033726.1-P	Field mustard	nucleus	36.63	40.53
CDY22303	Canola	nucleus	36.63	40.53
TraesCS7D01G347500.1	Wheat	nucleus	44.58	40.39
CDX94762	Canola	nucleus	36.39	40.27
TraesCS7B01G251400.1	Wheat	nucleus	43.86	39.65
Zm00001d044785_P001	Maize	nucleus	45.06	39.29
EES02166	Sorghum	nucleus	46.27	38.63
EER88132	Sorghum	nucleus	43.37	38.63
Zm00001d039260_P002	Maize	nucleus	42.89	38.61
Os01t0239000-02	Rice	nucleus	49.4	38.03
TraesCS3B01G191600.1	Wheat	nucleus	45.54	37.57
TraesCS3D01G168200.2	Wheat	nucleus	45.06	37.18
TraesCS3A01G161000.1	Wheat	nucleus	45.3	36.94
HORVU3Hr1G032440.2	Barley	nucleus	44.58	36.56
HORVU3Hr1G032410.2	Barley	nucleus	10.12	20.1
VIT_02s0012g00570.t01	Wine grape	nucleus	26.27	19.53
CDX81968	Canola	nucleus	45.54	18.51

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100260852	wikigene:100260852	MapMan:15.5.2.3	ProteinID:CCB47310	ProteinID:CCB47310.1
UniProt:F6H5G9	EMBL:FN595235	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	EntrezGene:LOC100260852	wikigene:LOC100260852	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGR:TC62076
TIGRFAMs:TIGR01557	UniParc:UPI00021089EB	ArrayExpress:VIT_12s0028g03100	EnsemblPlantsGene:VIT_12s0028g03100	EnsemblPlants:VIT_12s0028g03100.t01	unigene:Vvi.6864
RefSeq:XP_002275230	RefSeq:XP_002275230.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:3879386..3882631

Molecular Weight (calculated)

45564.9 Da

IEP (calculated)

6.800

GRAVY (calculated)

-0.641

Length

415 amino acids

Sequence
(BLAST)

001: MESFSIGADD FPDFYEGNLL ECIDFDDLFI GIHDGEILPD LEMDPEILAE FSVSAGEESD VNTSVTEKKV EDNPKKEEED KVSDTGSGSG LGYGSSSSRG
101: EEIVSKRSES VATNASPKEV EKGRKSSAQS KNPQGKRKVK VDWTPELHRR FVQAVEQLGV DKAVPSRILE IMGIDCLTRH NIASHLQKYR SHRKHLLARE
201: AEAASWSQKR QMYGVAAGGG GHKREMGGWI PPTMGFPHIT PMHHHPFRPL HVWGHPTVDQ SAMHMWPKHL PHSPSPPPPP PPTWPPSATP PSPSPDPYWH
301: PHHQRVPNGL TQGTPCFPQP LAAARFATPP VTGIPPHPMY KVDHNHPGIG VPARHSGPFP LFDFHPSKET IDAAIGDALS KPWQPLPLGL KPPSLDGVMV
401: ELQRQGVPKI PPTCA

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.