Factsheet for GSMUA_Achr7P11040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P11500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44190.1	GSMUA_Achr7P11500_001	AT5G39610.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	70.19	69.86
GSMUA_Achr2P15250_001	Banana	nucleus	63.38	63.68
GSMUA_Achr6P05850_001	Banana	nucleus	56.1	54.32
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	24.18	53.65
PGSC0003DMT400056255	Potato	nucleus	38.5	51.73
Os06t0348800-01	Rice	mitochondrion, plastid	53.29	49.89
VIT_12s0028g03100.t01	Wine grape	nucleus	48.12	49.4
KRH22338	Soybean	nucleus	50.47	49.31
KRH26988	Soybean	nucleus	50.47	48.75
KRH25644	Soybean	nucleus	47.65	47.43
Zm00001d044785_P001	Maize	nucleus	52.35	46.85
KRH55898	Soybean	nucleus	46.71	46.71
PGSC0003DMT400024265	Potato	nucleus	48.83	46.12
HORVU7Hr1G083690.1	Barley	nucleus	49.3	45.75
HORVU0Hr1G010940.1	Barley	nucleus	49.3	45.75
HORVU0Hr1G007770.1	Barley	nucleus	49.3	45.75
TraesCS7D01G347500.1	Wheat	nucleus	48.83	45.41
EER88132	Sorghum	nucleus	49.53	45.28
TraesCS7A01G339800.1	Wheat	nucleus	48.83	45.12
TraesCS7B01G251400.1	Wheat	nucleus	48.12	44.66
Bra031129.1-P	Field mustard	nucleus	42.96	43.99
CDY14913	Canola	nucleus	38.97	43.8
AT2G20570.2	Thale cress	nucleus	44.6	43.58
AT5G44190.1	Thale cress	nucleus	39.2	43.26
Os01t0239000-02	Rice	nucleus	54.46	43.04
Bra036015.1-P	Field mustard	nucleus	37.32	42.97
Zm00001d039260_P002	Maize	nucleus	45.31	41.87
EES02166	Sorghum	nucleus	48.83	41.85
CDX96952	Canola	nucleus	35.68	41.42
CDY05773	Canola	nucleus	43.19	41.26
Bra036482.1-P	Field mustard	nucleus	42.02	41.24
TraesCS3A01G161000.1	Wheat	nucleus	48.59	40.67
TraesCS3D01G168200.2	Wheat	nucleus	47.89	40.56
CDY22303	Canola	nucleus	35.68	40.53
Bra033726.1-P	Field mustard	nucleus	35.21	40.0
CDX94762	Canola	nucleus	35.21	40.0
HORVU3Hr1G032440.2	Barley	nucleus	47.18	39.72
TraesCS3B01G191600.1	Wheat	nucleus	46.71	39.56
CDY31954	Canola	nucleus	41.78	39.56
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	48.12	37.75
GSMUA_Achr11P...	Banana	nucleus	25.82	22.82
HORVU3Hr1G032410.2	Barley	nucleus	10.56	21.53
GSMUA_Achr2P18200_001	Banana	nucleus	25.82	19.86
CDX81968	Canola	nucleus	42.96	17.92

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr7G11040_001	EnsemblPlants:GSMUA_Achr7P11040_001	EnsemblPlants:GSMUA_Achr7T11040_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0TGJ2
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF1
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000296CE7C	SEG:seg	:

Description

Putative myb-like DNA-binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G11040_001]

Coordinates

chr7:+:8846632..8849520

Molecular Weight (calculated)

46448.1 Da

IEP (calculated)

5.577

GRAVY (calculated)

-0.519

Length

426 amino acids

Sequence
(BLAST)

001: MLAVESLRGS NGDDRDGTLG NFPVSDDFGD EALLEDIDFG DLFMGIDDGD VLPDLELDPA EIFAAFSVGE EGSGKATAVE EPEGAFGGDG STQDVVVFEA
101: EIGEEEKDVK RQREEVVGAT TTEDSMVMPS GLRSDSPDGN KGRKPSSPSA TRGSHGKRKS KVDWTPELHR RFVQAVEQLG IDKAVPSRIL ELMGIDCLTR
201: HNIASHLQKY RSHRKHLLAR EAEAASWTRR RQMYPKKDVN PWLAPTIGFP PPPPPPAVRP FRPLHVWGHP TAEAPLVHMW LRRPVPQPPS LPWAPQPPLP
301: PPPDPSYWHH LYQRGGREGW VPHAMTQGTP CFPQPLPAAR FPAPPPVPGI VPQPMYRPIP PPVTDHSSSQ LQLDAHPSTE SIDAAIGDVL AKPWLPLPLG
401: LKSPSVDGVL VELQKQGVPK VPPACG

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.