Factsheet for PGSC0003DMT400056255

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003380

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44190.1	PGSC0003DMT400003380	AT5G39610.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	48.58	80.21
VIT_12s0028g03100.t01	Wine grape	nucleus	57.41	43.86
PGSC0003DMT400024265	Potato	nucleus	61.51	43.24
KRH55898	Soybean	nucleus	55.84	41.55
KRH25644	Soybean	nucleus	54.57	40.42
KRH22338	Soybean	nucleus	55.2	40.14
KRH26988	Soybean	nucleus	55.2	39.68
GSMUA_Achr10P...	Banana	nucleus	52.37	38.78
GSMUA_Achr7P11040_001	Banana	nucleus	51.73	38.5
GSMUA_Achr2P15250_001	Banana	nucleus	50.47	37.74
Bra031129.1-P	Field mustard	nucleus	47.0	35.82
CDY14913	Canola	nucleus	42.27	35.36
AT2G20570.2	Thale cress	nucleus	48.58	35.32
AT5G44190.1	Thale cress	nucleus	42.9	35.23
CDY22303	Canola	nucleus	41.32	34.93
Bra036015.1-P	Field mustard	nucleus	40.69	34.86
CDX94762	Canola	nucleus	41.01	34.67
Bra033726.1-P	Field mustard	nucleus	41.01	34.67
GSMUA_Achr6P05850_001	Banana	nucleus	47.63	34.32
Os06t0348800-01	Rice	mitochondrion, plastid	48.27	33.63
CDX96952	Canola	nucleus	38.8	33.52
HORVU0Hr1G010940.1	Barley	nucleus	48.27	33.33
HORVU0Hr1G007770.1	Barley	nucleus	48.27	33.33
HORVU7Hr1G083690.1	Barley	nucleus	48.27	33.33
TraesCS7B01G251400.1	Wheat	nucleus	48.27	33.33
TraesCS7A01G339800.1	Wheat	nucleus	47.63	32.75
TraesCS7D01G347500.1	Wheat	nucleus	47.32	32.75
Bra036482.1-P	Field mustard	nucleus	44.16	32.26
Zm00001d044785_P001	Maize	nucleus	48.27	32.14
CDY05773	Canola	nucleus	45.11	32.06
EER88132	Sorghum	nucleus	45.74	31.12
Zm00001d039260_P002	Maize	nucleus	45.11	31.02
CDY31954	Canola	nucleus	43.53	30.67
TraesCS3D01G168200.2	Wheat	nucleus	47.95	30.22
TraesCS3A01G161000.1	Wheat	nucleus	48.27	30.06
TraesCS3B01G191600.1	Wheat	nucleus	47.0	29.62
HORVU3Hr1G032440.2	Barley	nucleus	46.69	29.25
EES02166	Sorghum	nucleus	45.74	29.18
Os01t0239000-02	Rice	nucleus	49.21	28.94
PGSC0003DMT400068374	Potato	nucleus	29.97	17.15
PGSC0003DMT400062232	Potato	nucleus	29.34	16.61
HORVU3Hr1G032410.2	Barley	nucleus	9.78	14.83
CDX81968	Canola	nucleus	47.0	14.59

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102593464	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1BZ73	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400021857	PGSC:PGSC0003DMG400021857	EnsemblPlants:PGSC0003DMT400056255	PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF1
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00026B61BC	RefSeq:XP_006366301.1	RefSeq:XP_015160308.1
SEG:seg	:	:	:	:	:

Description

GPRI2 [Source:PGSC_GENE;Acc:PGSC0003DMG400021857]

Coordinates

chr10:+:3545367..3548798

Molecular Weight (calculated)

35378.7 Da

IEP (calculated)

9.318

GRAVY (calculated)

-0.409

Length

317 amino acids

Sequence
(BLAST)

001: MLALSSSLSY KNERENYDLF QDFPHGNLIN TIDFDDLFDE INDGDLLPDF EIFGEFSVIS CEESATHGNM KFKSKEAKKS SSQIKNPQGK RKVKVDWTPE
101: LHRKFVKAIE KLGVDKAVPS RILELMSTHG LTRHNIASHL QKYRAHRKHL LAREAEAVSL SHKKQMYSGT AMIGGGGKRI LMNPWPSPPT MGFPPMAHHI
201: KPLHVWGHPH VNNSFWHPHY QRVSNSLAPG TLCFPAPIAP TRFAAPLMVP GIPPPHPIIR VDTISSDLHP SNESIDAAIE DVLAKPQLPL PIGLKPPSID
301: SVLNELQRQG ITKIPPT

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.