CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25644	Soybean	nucleus	81.46	81.07
KRH22338	Soybean	nucleus	64.08	62.61
KRH26988	Soybean	nucleus	63.62	61.45
VIT_12s0028g03100.t01	Wine grape	nucleus	57.04	58.55
PGSC0003DMT400056255	Potato	nucleus	41.55	55.84
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	25.12	55.73
PGSC0003DMT400024265	Potato	nucleus	57.51	54.32
GSMUA_Achr2P15250_001	Banana	nucleus	47.65	47.88
GSMUA_Achr7P11040_001	Banana	nucleus	46.71	46.71
AT5G44190.1	Thale cress	nucleus	42.25	46.63
GSMUA_Achr10P...	Banana	nucleus	46.48	46.26
Bra031129.1-P	Field mustard	nucleus	43.43	44.47
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	56.57	44.38
Bra036015.1-P	Field mustard	nucleus	38.26	44.05
CDX94762	Canola	nucleus	38.73	44.0
CDY14913	Canola	nucleus	38.73	43.54
CDY22303	Canola	nucleus	37.79	42.93
Bra033726.1-P	Field mustard	nucleus	37.79	42.93
AT2G20570.2	Thale cress	nucleus	43.66	42.66
CDX96952	Canola	nucleus	35.92	41.69
CDY05773	Canola	nucleus	42.72	40.81
Bra036482.1-P	Field mustard	nucleus	41.55	40.78
TraesCS7D01G347500.1	Wheat	nucleus	43.43	40.39
GSMUA_Achr6P05850_001	Banana	nucleus	41.55	40.23
TraesCS7B01G251400.1	Wheat	nucleus	43.19	40.09
Os06t0348800-01	Rice	mitochondrion, plastid	42.49	39.78
TraesCS7A01G339800.1	Wheat	nucleus	42.72	39.48
HORVU7Hr1G083690.1	Barley	nucleus	42.02	39.0
HORVU0Hr1G010940.1	Barley	nucleus	42.02	39.0
HORVU0Hr1G007770.1	Barley	nucleus	42.02	39.0
CDY31954	Canola	nucleus	41.08	38.89
EER88132	Sorghum	nucleus	40.38	36.91
Zm00001d039260_P002	Maize	nucleus	39.67	36.66
Zm00001d044785_P001	Maize	nucleus	40.61	36.34
Os01t0239000-02	Rice	nucleus	45.77	36.18
EES02166	Sorghum	nucleus	41.31	35.41
TraesCS3D01G168200.2	Wheat	nucleus	41.78	35.39
TraesCS3A01G161000.1	Wheat	nucleus	42.02	35.17
TraesCS3B01G191600.1	Wheat	nucleus	41.31	34.99
HORVU3Hr1G032440.2	Barley	nucleus	41.55	34.98
HORVU3Hr1G032410.2	Barley	nucleus	9.62	19.62
KRH04301	Soybean	nucleus	26.29	19.44
KRH57579	Soybean	nucleus	25.59	19.09
CDX81968	Canola	nucleus	43.9	18.32
KRH77235	Soybean	nucleus	23.71	18.1
KRH28259	Soybean	nucleus	24.18	18.07

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EMBL:ACUP02004066	EnsemblPlantsGene:GLYMA_06G289300	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1KEY5	InterPro:IPR017930	EnsemblPlants:KRH55898	ProteinID:KRH55898
ProteinID:KRH55898.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31312
PANTHER:PTHR31312:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000233A484	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:47797186..47802610

Molecular Weight (calculated)

46702.2 Da

IEP (calculated)

6.118

GRAVY (calculated)

-0.549

Length

426 amino acids

Sequence
(BLAST)

001: MLAVSPLRSN IKDEKKQGEM EGNFSMATTT TDDVVFGDLS EGNLLESINF DELFVGIDIH GDVLPDLEMF GEFSVDVSTG EESSEMNSSA KSSKLENDQN
101: VIATTSKKEE EEDKTSCNAS GQDLGSNRGE EIVSERDESV VVNPAPKDGG KGRKSSSAQS KNNSSSNNNP QGKRKVKVDW TPELHRRFVQ AVEQLGVDKA
201: VPSRILEIMG IDCLTRHNIA SHLQKYRSHR KHLLAREAEA ASWSQRRQLC AGGGKREGSP WLAPTMGFPP MTPPMHHFRP LHVWGHPSMD QSFMHMWPKH
301: LPNSPPLSWP PPAAPPQEPS FWHQLVPNAL IPGTACFPQL LTPTRFGSPP VPGIPPHAMY KADHDIGLPG PLFDFYPSKE CIDAAIGDVL SKPWLPLPIG
401: LKAPALDSVM SELQRQGIPN IPPSSA

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.