CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67433
CDX74442
CDY30258
CDY37008

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44190.1	CDX67433	AT5G39610.1	23459204
AT5G44190.1	CDX74442	AT5G39610.1	23459204
AT5G44190.1	CDY30258	AT5G39610.1	23459204
AT5G44190.1	CDY37008	AT5G39610.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96952	Canola	nucleus	86.28	89.1
Bra036015.1-P	Field mustard	nucleus	82.06	84.05
AT5G44190.1	Thale cress	nucleus	70.71	69.43
CDY22303	Canola	nucleus	67.55	68.27
CDX94762	Canola	nucleus	64.38	65.07
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	22.43	44.27
PGSC0003DMT400056255	Potato	nucleus	35.36	42.27
KRH22338	Soybean	nucleus	45.38	39.45
GSMUA_Achr7P11040_001	Banana	nucleus	43.8	38.97
KRH25644	Soybean	nucleus	43.8	38.78
KRH55898	Soybean	nucleus	43.54	38.73
KRH26988	Soybean	nucleus	44.85	38.55
VIT_12s0028g03100.t01	Wine grape	nucleus	41.69	38.07
GSMUA_Achr2P15250_001	Banana	nucleus	41.69	37.26
PGSC0003DMT400024265	Potato	nucleus	44.33	37.25
GSMUA_Achr10P...	Banana	nucleus	40.11	35.51
CDY05773	Canola	nucleus	41.69	35.43
TraesCS7B01G251400.1	Wheat	nucleus	41.69	34.42
GSMUA_Achr6P05850_001	Banana	nucleus	39.84	34.32
TraesCS7D01G347500.1	Wheat	nucleus	41.42	34.28
CDY31954	Canola	nucleus	40.63	34.22
Os06t0348800-01	Rice	mitochondrion, plastid	40.9	34.07
TraesCS7A01G339800.1	Wheat	nucleus	41.42	34.06
EER88132	Sorghum	nucleus	41.42	33.69
Zm00001d039260_P002	Maize	nucleus	40.63	33.41
HORVU0Hr1G007770.1	Barley	nucleus	40.37	33.33
HORVU0Hr1G010940.1	Barley	nucleus	40.37	33.33
HORVU7Hr1G083690.1	Barley	nucleus	40.37	33.33
TraesCS3D01G168200.2	Wheat	nucleus	41.95	31.61
Zm00001d044785_P001	Maize	nucleus	39.58	31.51
TraesCS3A01G161000.1	Wheat	nucleus	42.22	31.43
TraesCS3B01G191600.1	Wheat	nucleus	41.69	31.41
HORVU3Hr1G032440.2	Barley	nucleus	41.69	31.23
EES02166	Sorghum	nucleus	40.9	31.19
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	44.59	31.12
Os01t0239000-02	Rice	nucleus	41.95	29.5
CDX78822	Canola	nucleus	27.7	20.83
CDY44493	Canola	nucleus	27.18	20.77
HORVU3Hr1G032410.2	Barley	nucleus	11.35	20.57
CDY01512	Canola	nucleus	27.18	19.85
CDX90427	Canola	nucleus	27.18	19.81
CDX81968	Canola	nucleus	43.27	16.06

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:A0A078FRG9	UniProt:A0A078FRG9	EnsemblPlants:CDY14913	ProteinID:CDY14913
ProteinID:CDY14913.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00084832001	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31312
PANTHER:PTHR31312:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0004EF3E99	SEG:seg

Description

BnaA02g22550DBnaA02g22550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRG9]

Coordinates

chrLK032048:+:470720..473923

Molecular Weight (calculated)

42055.9 Da

IEP (calculated)

7.206

GRAVY (calculated)

-0.588

Length

379 amino acids

Sequence
(BLAST)

001: MLTVSLLIVN TTSRENYMAA DFSDFTTEGL PDFTMVGEGS LDLLGGIDYY DDFFIGFDGD DALPDLEIDC DILGEYSGSG RDDEQEMEGN SSTASETSER
101: DGGVVKLDGG DITHKMVRRG KRKGKKNKDC LSVDNEIKKK PKVDWTPELH RNFVQAVEQL GIDKAVPSRI LEIMNVKSLT RHNVASHLQK YRSHRKHLLA
201: REAEAASWNL RRHTTVAVAG LGGKKPWMAP ALGYRPNVTQ MHHGHFRPLH VWGHPTWPKH KHNHPSSSTH RRYQIPAVAA PPSSWPGQPP YWHQQALYPQ
301: GYGMATPNHS IIGVPTRQLS PTTNPPIDIH PSNESIDAAI GDVITKPWLP LPLGLKPPSV DGVMTELQRQ GVPNVPPLP

Best Arabidopsis Sequence Match ( AT5G44190.1 )
(BLAST)

001: MLTVSPAPVL IGNNSKDTYM AADFADFTTE DLPDFTTVGD FSDDLLDGID YYDDLFIGFD GDDVLPDLEI DSEILGEYSG SGRDEEQEME GNTSTASETS
101: ERDVGVCKQE GGGGGDGGFR DKTVRRGKRK GKKSKDCLSD ENDIKKKPKV DWTPELHRKF VQAVEQLGVD KAVPSRILEI MNVKSLTRHN VASHLQKYRS
201: HRKHLLAREA EAASWNLRRH ATVAVPGVGG GGKKPWTAPA LGYPPHVAPM HHGHFRPLHV WGHPTWPKHK PNTPASAHRT YPMPAIAAAP ASWPGHPPYW
301: HQQPLYPQGY GMASSNHSSI GVPTRQLGPT NPPIDIHPSN ESIDAAIGDV ISKPWLPLPL GLKPPSVDGV MTELQRQGVS NVPPLP

Arabidopsis Description

GLK2Transcription activator GLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.