Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G39610.1 | CDX94762 | AT5G44190.1 | 23459204 |
| AT5G39610.1 | CDX96952 | AT5G44190.1 | 23459204 |
| AT5G39610.1 | CDY14913 | AT5G44190.1 | 23459204 |
| AT5G39610.1 | CDY22303 | AT5G44190.1 | 23459204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67433 | Canola | nucleus | 94.1 | 94.1 |
| AT5G39610.1 | Thale cress | cytosol | 83.33 | 84.21 |
| CDY30258 | Canola | nucleus | 82.99 | 82.7 |
| CDX74442 | Canola | nucleus | 82.29 | 82.01 |
| CDY29982 | Canola | cytosol | 39.24 | 65.7 |
| CDY66026 | Canola | cytoskeleton, cytosol, nucleus | 56.25 | 62.55 |
| CDX85242 | Canola | cytosol | 66.67 | 59.81 |
| CDX86391 | Canola | cytoskeleton, cytosol, nucleus | 63.54 | 59.22 |
| CDY68680 | Canola | nucleus | 39.93 | 54.76 |
| CDY70041 | Canola | nucleus | 39.93 | 53.74 |
| CDY69936 | Canola | nucleus | 51.04 | 51.94 |
| CDY64672 | Canola | nucleus | 51.04 | 51.94 |
| CDY51707 | Canola | cytosol | 28.47 | 51.9 |
| CDY20001 | Canola | cytoskeleton, cytosol, nucleus | 65.62 | 50.81 |
| CDX92881 | Canola | cytosol | 28.47 | 50.31 |
| Solyc02g088180.2.1 | Tomato | cytosol | 55.56 | 50.16 |
| CDY56940 | Canola | nucleus | 55.21 | 48.62 |
| PGSC0003DMT400003380 | Potato | nucleus | 54.51 | 48.61 |
| CDY14030 | Canola | nucleus | 52.78 | 48.25 |
| CDY40775 | Canola | nucleus | 52.78 | 46.91 |
| CDY42875 | Canola | nucleus | 52.08 | 46.15 |
| CDX75966 | Canola | nucleus | 40.97 | 41.99 |
| CDY51910 | Canola | nucleus | 35.76 | 41.2 |
| CDY51941 | Canola | nucleus | 41.32 | 39.8 |
| CDY18519 | Canola | nucleus | 41.32 | 39.4 |
| CDY20103 | Canola | nucleus | 41.32 | 39.27 |
| CDY51238 | Canola | nucleus | 45.83 | 39.17 |
| CDX70804 | Canola | nucleus | 45.83 | 39.17 |
| CDY67593 | Canola | nucleus | 41.67 | 39.09 |
| CDX75813 | Canola | nucleus | 41.67 | 38.96 |
| CDX82444 | Canola | nucleus | 41.67 | 38.84 |
| CDY69369 | Canola | nucleus | 40.97 | 38.82 |
| CDY53250 | Canola | nucleus | 45.14 | 38.69 |
| CDY02636 | Canola | nucleus | 44.79 | 38.28 |
| CDY32316 | Canola | nucleus | 40.62 | 38.11 |
| CDX82566 | Canola | nucleus | 36.11 | 37.55 |
| CDY20314 | Canola | nucleus | 41.32 | 37.54 |
| CDY42901 | Canola | nucleus | 44.79 | 37.5 |
| GSMUA_Achr7P11500_001 | Banana | nucleus | 44.1 | 37.35 |
| CDY50879 | Canola | cytoskeleton, cytosol, nucleus | 44.44 | 37.32 |
| CDX76817 | Canola | nucleus | 40.62 | 36.91 |
| CDY20411 | Canola | cytosol | 40.97 | 36.76 |
| CDY34773 | Canola | nucleus | 40.28 | 36.59 |
| CDY45986 | Canola | cytosol | 40.62 | 36.56 |
| CDY23558 | Canola | nucleus | 34.72 | 36.5 |
| CDY60115 | Canola | nucleus | 35.07 | 36.2 |
| CDX96262 | Canola | nucleus | 45.83 | 35.97 |
| CDY28805 | Canola | nucleus | 45.49 | 35.69 |
| CDX87602 | Canola | cytosol | 41.32 | 35.52 |
| CDX88273 | Canola | cytosol | 41.32 | 35.31 |
| CDX99695 | Canola | mitochondrion | 31.6 | 33.33 |
| CDX98529 | Canola | mitochondrion | 31.6 | 33.33 |
| CDY42401 | Canola | nucleus | 35.42 | 31.78 |
| CDY10515 | Canola | nucleus | 35.07 | 31.37 |
| CDY14236 | Canola | cytosol | 31.94 | 27.38 |
| CDX97445 | Canola | cytosol | 31.94 | 27.38 |
| CDY35197 | Canola | nucleus | 31.6 | 27.25 |
| CDY38380 | Canola | nucleus | 31.6 | 26.45 |
| CDX92880 | Canola | nucleus | 4.17 | 6.06 |
| CDY51708 | Canola | nucleus | 3.82 | 5.53 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078HJJ3 | UniProt:A0A078HJJ3 | EnsemblPlants:CDY37008 | ProteinID:CDY37008 |
| ProteinID:CDY37008.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00063201001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 |
| PANTHER:PTHR31744:SF7 | SUPFAM:SSF101941 | UniParc:UPI0004EB6E18 | : | : | : |
Description
BnaC06g12550DBnaC06g12550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJJ3]
Coordinates
chrLK032389:-:234213..235565
Molecular Weight (calculated)
33211.5 Da
IEP (calculated)
6.108
GRAVY (calculated)
-0.544
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCDASIIVE MVEDEEHIDL PPGFRFHPTD EELISHYLKQ KVFNTLFSAT AIGEVDLNKI EPWDLPRKAK MGEKEWYFFC VRDRKYPTGL RTNRATEAGY
101: WKATGKDKEI FKGNSLVGMK KTLVFYKGRA PKGIKTNWVL HEYRLEGIFL LQNLPQTAKN EWVICRVFQK LADGTKVDMS DLMFLDSHFN RTEPTRLPSL
201: MDCSQRDSFL GSSTHVTCFS DQETKDKRLM HHESKDRSGS LFYSDPLFLQ DNYSLMKTFL NDQETLFPGP DSTGLAAGTG ELDCFWNP
101: WKATGKDKEI FKGNSLVGMK KTLVFYKGRA PKGIKTNWVL HEYRLEGIFL LQNLPQTAKN EWVICRVFQK LADGTKVDMS DLMFLDSHFN RTEPTRLPSL
201: MDCSQRDSFL GSSTHVTCFS DQETKDKRLM HHESKDRSGS LFYSDPLFLQ DNYSLMKTFL NDQETLFPGP DSTGLAAGTG ELDCFWNP
001: MDYEASRIVE MVEDEEHIDL PPGFRFHPTD EELITHYLKP KVFNTFFSAT AIGEVDLNKI EPWDLPWKAK MGEKEWYFFC VRDRKYPTGL RTNRATEAGY
101: WKATGKDKEI FKGKSLVGMK KTLVFYKGRA PKGVKTNWVM HEYRLEGKYC IENLPQTAKN EWVICRVFQK RADGTKVPMS MLDPHINRME PAGLPSLMDC
201: SQRDSFTGSS SHVTCFSDQE TEDKRLVHES KDGFGSLFYS DPLFLQDNYS LMKLLLDGQE TQFSGKPFDG RDSSGTEELD CVWNF
101: WKATGKDKEI FKGKSLVGMK KTLVFYKGRA PKGVKTNWVM HEYRLEGKYC IENLPQTAKN EWVICRVFQK RADGTKVPMS MLDPHINRME PAGLPSLMDC
201: SQRDSFTGSS SHVTCFSDQE TEDKRLVHES KDGFGSLFYS DPLFLQDNYS LMKLLLDGQE TQFSGKPFDG RDSSGTEELD CVWNF
Arabidopsis Description
NAC92NAC domain-containing protein 92 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.