Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytoskeleton 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G29035.1 | CDX77337 | AT2G47450.1 | 21798944 |
| AT3G29035.1 | CDY70592 | AT2G47450.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85242 | Canola | cytosol | 78.76 | 63.55 |
| CDX86391 | Canola | cytoskeleton, cytosol, nucleus | 74.52 | 62.46 |
| CDY20001 | Canola | cytoskeleton, cytosol, nucleus | 88.8 | 61.83 |
| CDY29982 | Canola | cytosol | 40.54 | 61.05 |
| AT3G29035.1 | Thale cress | nucleus | 73.75 | 60.06 |
| CDY30258 | Canola | nucleus | 66.02 | 59.17 |
| CDX74442 | Canola | nucleus | 66.02 | 59.17 |
| CDX67433 | Canola | nucleus | 62.93 | 56.6 |
| CDY37008 | Canola | nucleus | 62.55 | 56.25 |
| CDY68680 | Canola | nucleus | 43.63 | 53.81 |
| CDY70041 | Canola | nucleus | 43.63 | 52.8 |
| CDY64672 | Canola | nucleus | 56.37 | 51.59 |
| CDY69936 | Canola | nucleus | 55.6 | 50.88 |
| CDY51707 | Canola | cytosol | 30.89 | 50.63 |
| CDX92881 | Canola | cytosol | 30.89 | 49.08 |
| Solyc02g088180.2.1 | Tomato | cytosol | 59.85 | 48.59 |
| PGSC0003DMT400003380 | Potato | nucleus | 59.07 | 47.37 |
| CDY14030 | Canola | nucleus | 57.53 | 47.3 |
| CDY40775 | Canola | nucleus | 57.53 | 45.99 |
| CDY56940 | Canola | nucleus | 57.14 | 45.26 |
| CDY42875 | Canola | nucleus | 55.6 | 44.31 |
| CDX75966 | Canola | nucleus | 44.79 | 41.28 |
| CDY51910 | Canola | nucleus | 38.61 | 40.0 |
| CDY69369 | Canola | nucleus | 45.56 | 38.82 |
| CDY51941 | Canola | nucleus | 44.79 | 38.8 |
| CDY18519 | Canola | nucleus | 45.17 | 38.74 |
| CDX75813 | Canola | nucleus | 45.56 | 38.31 |
| CDY20103 | Canola | nucleus | 44.79 | 38.28 |
| CDX82444 | Canola | nucleus | 45.56 | 38.19 |
| CDY67593 | Canola | nucleus | 44.79 | 37.78 |
| CDY32316 | Canola | nucleus | 44.4 | 37.46 |
| CDY20411 | Canola | cytosol | 44.79 | 36.14 |
| CDY23558 | Canola | nucleus | 38.22 | 36.13 |
| CDX82566 | Canola | nucleus | 38.61 | 36.1 |
| CDY20314 | Canola | nucleus | 44.02 | 35.96 |
| CDY45986 | Canola | cytosol | 44.4 | 35.94 |
| CDX70804 | Canola | nucleus | 46.72 | 35.91 |
| CDY51238 | Canola | nucleus | 46.72 | 35.91 |
| CDY02636 | Canola | nucleus | 46.72 | 35.91 |
| CDY60115 | Canola | nucleus | 38.61 | 35.84 |
| CDY53250 | Canola | nucleus | 46.33 | 35.71 |
| CDY34773 | Canola | nucleus | 43.63 | 35.65 |
| CDX76817 | Canola | nucleus | 43.63 | 35.65 |
| CDX87602 | Canola | cytosol | 45.95 | 35.52 |
| CDX88273 | Canola | cytosol | 45.95 | 35.31 |
| CDY28805 | Canola | nucleus | 48.65 | 34.33 |
| CDX96262 | Canola | nucleus | 48.65 | 34.33 |
| CDY50879 | Canola | cytoskeleton, cytosol, nucleus | 45.17 | 34.11 |
| CDY42901 | Canola | nucleus | 45.17 | 34.01 |
| GSMUA_Achr7P11500_001 | Banana | nucleus | 44.02 | 33.53 |
| CDY42401 | Canola | nucleus | 39.38 | 31.78 |
| CDX99695 | Canola | mitochondrion | 33.2 | 31.5 |
| CDX98529 | Canola | mitochondrion | 33.2 | 31.5 |
| CDY10515 | Canola | nucleus | 39.0 | 31.37 |
| CDY35197 | Canola | nucleus | 33.2 | 25.75 |
| CDX97445 | Canola | cytosol | 33.2 | 25.6 |
| CDY14236 | Canola | cytosol | 33.2 | 25.6 |
| CDY38380 | Canola | nucleus | 33.2 | 25.0 |
| CDX92880 | Canola | nucleus | 4.25 | 5.56 |
| CDY51708 | Canola | nucleus | 3.86 | 5.03 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078JJP4 | UniProt:A0A078JJP4 | EnsemblPlants:CDY66026 | ProteinID:CDY66026 |
| ProteinID:CDY66026.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00051194001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 |
| PANTHER:PTHR31744:SF7 | SUPFAM:SSF101941 | UniParc:UPI0004EED3FF | : | : | : |
Description
BnaCnng49350DBnaCnng49350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJP4]
Coordinates
chrLK035049:+:19937..21055
Molecular Weight (calculated)
29975.5 Da
IEP (calculated)
9.546
GRAVY (calculated)
-0.725
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSEVSRTGE ITKDSEQTDL PPGFRFHPTD EELISYYLRP KVLNTFFSAI AIGEVDLNKV EPWDIPWKAK IEEKEWYFFC LRDRKYPTGL RTNRATKAGY
101: WKATGKDKEI FKEKSLVGMK KTLVFYKGRA PKGVKTNWVM HEYRLEGKYA IDNNHKTAKN EWVISRIFQK QADGKKMHIS RINQFEPVGL PPLMDSSPYL
201: KSGGGDTFAW SLSHVPCFSD QTTEDKSHLS ESRDECNFTI FGSSSTHFIS RISVHRRTN
101: WKATGKDKEI FKEKSLVGMK KTLVFYKGRA PKGVKTNWVM HEYRLEGKYA IDNNHKTAKN EWVISRIFQK QADGKKMHIS RINQFEPVGL PPLMDSSPYL
201: KSGGGDTFAW SLSHVPCFSD QTTEDKSHLS ESRDECNFTI FGSSSTHFIS RISVHRRTN
001: MDYKVSRSGE IVEGEVEDSE KIDLPPGFRF HPTDEELITH YLRPKVVNSF FSAIAIGEVD LNKVEPWDLP WKAKLGEKEW YFFCVRDRKY PTGLRTNRAT
101: KAGYWKATGK DKEIFKGKSL VGMKKTLVFY KGRAPKGVKT NWVMHEYRLE GKFAIDNLSK TAKNECVISR VFHTRTDGTK EHMSVGLPPL MDSSPYLKSR
201: GQDSLAGTTL GGLLSHVTYF SDQTTDDKSL VADFKTTMFG SGSTNFLPNI GSLLDFDPLF LQNNSSVLKM LLDNEETQFK KNLHNSGSSE SELTASSWQG
301: HNSYGSTGPV NLDCVWKF
101: KAGYWKATGK DKEIFKGKSL VGMKKTLVFY KGRAPKGVKT NWVMHEYRLE GKFAIDNLSK TAKNECVISR VFHTRTDGTK EHMSVGLPPL MDSSPYLKSR
201: GQDSLAGTTL GGLLSHVTYF SDQTTDDKSL VADFKTTMFG SGSTNFLPNI GSLLDFDPLF LQNNSSVLKM LLDNEETQFK KNLHNSGSSE SELTASSWQG
301: HNSYGSTGPV NLDCVWKF
Arabidopsis Description
NAC59NAC domain-containing protein 59 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.