Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009246.1-P | Field mustard | nucleus | 99.65 | 99.65 |
| CDY69936 | Canola | nucleus | 93.64 | 93.64 |
| CDY14030 | Canola | nucleus | 85.16 | 76.51 |
| CDY40775 | Canola | nucleus | 84.81 | 74.07 |
| AT5G07680.1 | Thale cress | nucleus | 84.45 | 72.64 |
| CDY56940 | Canola | nucleus | 77.39 | 66.97 |
| CDY29982 | Canola | cytosol | 39.58 | 65.12 |
| CDY42875 | Canola | nucleus | 72.44 | 63.08 |
| CDY66026 | Canola | cytoskeleton, cytosol, nucleus | 51.59 | 56.37 |
| CDY68680 | Canola | nucleus | 41.34 | 55.71 |
| CDY70041 | Canola | nucleus | 41.34 | 54.67 |
| CDY51707 | Canola | cytosol | 29.68 | 53.16 |
| CDY30258 | Canola | nucleus | 53.0 | 51.9 |
| CDX74442 | Canola | nucleus | 52.65 | 51.56 |
| CDX92881 | Canola | cytosol | 29.68 | 51.53 |
| CDX67433 | Canola | nucleus | 51.94 | 51.04 |
| CDY37008 | Canola | nucleus | 51.94 | 51.04 |
| VIT_17s0000g06400.t01 | Wine grape | nucleus | 62.9 | 49.44 |
| KRH56898 | Soybean | nucleus | 60.78 | 49.14 |
| KRH03497 | Soybean | nucleus | 60.78 | 49.14 |
| CDX86391 | Canola | cytoskeleton, cytosol, nucleus | 52.65 | 48.22 |
| CDX85242 | Canola | cytosol | 54.42 | 47.98 |
| CDY20103 | Canola | nucleus | 46.29 | 43.23 |
| CDX75813 | Canola | nucleus | 47.0 | 43.18 |
| CDX75966 | Canola | nucleus | 42.76 | 43.06 |
| CDX82444 | Canola | nucleus | 47.0 | 43.04 |
| CDY51910 | Canola | nucleus | 37.81 | 42.8 |
| CDY32316 | Canola | nucleus | 45.58 | 42.02 |
| CDY20001 | Canola | cytoskeleton, cytosol, nucleus | 55.12 | 41.94 |
| CDY18519 | Canola | nucleus | 44.52 | 41.72 |
| CDY51941 | Canola | nucleus | 43.82 | 41.47 |
| CDY69369 | Canola | nucleus | 44.17 | 41.12 |
| CDY67593 | Canola | nucleus | 44.52 | 41.04 |
| CDY34773 | Canola | nucleus | 43.82 | 39.12 |
| CDY20314 | Canola | nucleus | 43.82 | 39.12 |
| CDX76817 | Canola | nucleus | 43.82 | 39.12 |
| CDX82566 | Canola | nucleus | 38.16 | 38.99 |
| CDY02636 | Canola | nucleus | 46.29 | 38.87 |
| CDY53250 | Canola | nucleus | 45.94 | 38.69 |
| CDY60115 | Canola | nucleus | 37.81 | 38.35 |
| CDY50879 | Canola | cytoskeleton, cytosol, nucleus | 46.29 | 38.19 |
| CDY51238 | Canola | nucleus | 45.23 | 37.98 |
| CDX70804 | Canola | nucleus | 45.23 | 37.98 |
| CDY23558 | Canola | nucleus | 36.4 | 37.59 |
| CDY42901 | Canola | nucleus | 45.58 | 37.5 |
| CDY45986 | Canola | cytosol | 42.05 | 37.19 |
| CDY20411 | Canola | cytosol | 42.05 | 37.07 |
| CDX96262 | Canola | nucleus | 47.7 | 36.78 |
| CDY28805 | Canola | nucleus | 47.35 | 36.51 |
| CDX87602 | Canola | cytosol | 43.11 | 36.42 |
| CDX88273 | Canola | cytosol | 43.11 | 36.2 |
| CDX99695 | Canola | mitochondrion | 34.63 | 35.9 |
| CDX98529 | Canola | mitochondrion | 34.63 | 35.9 |
| CDY10515 | Canola | nucleus | 38.16 | 33.54 |
| CDY42401 | Canola | nucleus | 37.81 | 33.33 |
| CDY14236 | Canola | cytosol | 33.92 | 28.57 |
| CDX97445 | Canola | cytosol | 33.92 | 28.57 |
| CDY35197 | Canola | nucleus | 33.57 | 28.44 |
| CDY38380 | Canola | nucleus | 33.92 | 27.91 |
| CDY51708 | Canola | nucleus | 5.65 | 8.04 |
| CDX92880 | Canola | nucleus | 5.3 | 7.58 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078JGW7 | UniProt:A0A078JGW7 | EnsemblPlants:CDY64672 | ProteinID:CDY64672 |
| ProteinID:CDY64672.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00042526001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 |
| PANTHER:PTHR31744:SF7 | SUPFAM:SSF101941 | UniParc:UPI0004EEFE16 | : | : | : |
Description
BnaA10g30260DBnaA10g30260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGW7]
Coordinates
chrLK034516:+:23363..24651
Molecular Weight (calculated)
32219.3 Da
IEP (calculated)
8.692
GRAVY (calculated)
-0.584
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: METIGGFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL NIDFSAKAIS EVDLNKAEPW ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA
101: TGKDKEIFRG KSLVGMKKTL VFYKGRAPKG HKTNWVMHEF RLDGKLSAYN LPKTAKNEWV ISRVFHKTEG GKKIPLSALI QIGSYGGSNL PPITDSSPYN
201: DITKTEPVYV PCFSNQTETR GTLLSYFSNS ALCSIPLYQP QSLQVFENLQ STHQILTQEH SVSHQEVPSS SAGPIDLESF LSY
101: TGKDKEIFRG KSLVGMKKTL VFYKGRAPKG HKTNWVMHEF RLDGKLSAYN LPKTAKNEWV ISRVFHKTEG GKKIPLSALI QIGSYGGSNL PPITDSSPYN
201: DITKTEPVYV PCFSNQTETR GTLLSYFSNS ALCSIPLYQP QSLQVFENLQ STHQILTQEH SVSHQEVPSS SAGPIDLESF LSY
001: METFGVFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DLGFSAKAIG EVDLNKAEPW ELPYKAKIGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY
201: NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
301: FEFGRKRFDH QEVPSPSSGP VDLEPFWNY
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY
201: NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
301: FEFGRKRFDH QEVPSPSSGP VDLEPFWNY
Arabidopsis Description
NAC079NAC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UL34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.