Factsheet for VIT_17s0000g06400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56898	Soybean	nucleus	68.89	70.86
KRH03497	Soybean	nucleus	68.33	70.29
KRH63309	Soybean	nucleus	65.83	66.39
KRH54575	Soybean	nucleus	65.83	66.39
AT5G61430.1	Thale cress	nucleus	61.94	66.37
Bra012960.1-P	Field mustard	nucleus	59.17	65.14
CDY56940	Canola	nucleus	58.89	64.83
CDY69936	Canola	nucleus	50.83	64.66
AT5G07680.1	Thale cress	nucleus	58.61	64.13
CDY64672	Canola	nucleus	49.44	62.9
CDY14030	Canola	nucleus	55.0	62.86
CDY42875	Canola	nucleus	56.67	62.77
Bra028685.1-P	Field mustard	nucleus	54.72	62.74
Bra009246.1-P	Field mustard	nucleus	49.17	62.54
Bra029313.1-P	Field mustard	nucleus	56.39	62.46
CDY40775	Canola	nucleus	55.28	61.42
VIT_14s0108g01070.t01	Wine grape	nucleus	66.67	57.01
VIT_19s0014g02200.t01	Wine grape	nucleus	43.89	43.53
VIT_08s0007g07640.t01	Wine grape	nucleus	46.67	41.69
VIT_04s0008g02710.t01	Wine grape	nucleus	37.22	41.23
VIT_19s0027g00230.t01	Wine grape	nucleus	33.06	40.34
VIT_17s0000g03660.t01	Wine grape	nucleus	36.39	40.06
VIT_07s0005g03610.t01	Wine grape	mitochondrion, nucleus	21.67	31.84
VIT_18s0122g00800.t01	Wine grape	nucleus	35.28	29.88

Protein Annotations

EntrezGene:100251801	wikigene:100251801	MapMan:15.5.17	Gene3D:3.30.310.150	UniProt:A5B814	EMBL:AM449920
ProteinID:CAN69806	ProteinID:CAN69806.1	ProteinID:CCB43076	ProteinID:CCB43076.1	EMBL:FN594950	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100251801	wikigene:LOC100251801
InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF7
SUPFAM:SSF101941	TIGR:TC70234	UniParc:UPI00015207A1	ArrayExpress:VIT_17s0000g06400	EnsemblPlantsGene:VIT_17s0000g06400	EnsemblPlants:VIT_17s0000g06400.t01
unigene:Vvi.939	RefSeq:XP_002284825	RefSeq:XP_002284825.1	:	:	:

Description

No Description!

Coordinates

chr17:+:6977372..6979197

Molecular Weight (calculated)

40583.0 Da

IEP (calculated)

8.009

GRAVY (calculated)

-0.573

Length

360 amino acids

Sequence
(BLAST)

001: MENIAGLSVE DDQMILPPGF RFHPTDEELI THYLSKKVID SNFSARAIGQ VNLNNSEPWE LPGKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT
101: GKDKEIFRGK SLVGMKKTLV FYAGRAPKGE KTNWVMHEYR LEGKFSLHNL PQTAKNEWVI CRVFQKSSGG KKTHISGIGR LSSYGNELNP SVLPPLMDAS
201: AAYNPRTRPA TSQSPHVPCF SNPIDVPRNQ EDIFDCFNNP LLAISSNPSD IFQRFHLPNP FYSSHAATIP GTLQYPTSFL MQDQPSLRAL LENHGSNMRQ
301: SQKLEREMIS VSQETGLSTD INTEISSVVS NLELGKRPFE DQHVPSTSVG PVDLDPLWNY

Best Arabidopsis Sequence Match ( AT5G61430.1 )
(BLAST)

001: METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD TSFSAKAIGE VDLNKSEPWE LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT
101: GKDKEIYRGK SLVGMKKTLV FYRGRAPKGQ KTNWVMHEYR LEGKFSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR IGSLGTDFNP SLLPSLTDSS
201: PYNDKTKTEP VYVPCFSNQT DQNQGTTLNC FSSPVLNSIQ ADIFHRIPLY QTQSLQVSMN LQSPVLTQEH SVLHAMIENN RRQSLKTMSV SQETGVSTDM
301: NTDISSDFEF GKRRFDSQED PSSSTGPVDL EPFWNY

Arabidopsis Description

NAC100NAC domain-containing protein 100 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.