Factsheet for VIT_07s0005g03610.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51707	Canola	cytosol	33.88	52.53
CDX92881	Canola	cytosol	33.47	50.31
KRH67403	Soybean	cytosol, nucleus, plastid	55.92	46.28
KRG95684	Soybean	cytosol, nucleus, peroxisome	54.29	45.24
KRH32193	Soybean	cytosol, nucleus, plastid	54.29	44.93
PGSC0003DMT400051915	Potato	cytosol	48.57	41.9
Os04t0515900-01	Rice	nucleus	46.53	41.01
Solyc09g025310.2.1	Tomato	nucleus	44.9	40.74
GSMUA_Achr5P18670_001	Banana	nucleus	44.49	39.93
PGSC0003DMT400026644	Potato	cytosol, nucleus, peroxisome	44.49	39.35
GSMUA_Achr11P...	Banana	nucleus	42.04	39.31
GSMUA_AchrUn_...	Banana	nucleus	46.12	38.97
GSMUA_AchrUn_...	Banana	nucleus	40.82	38.91
TraesCS6B01G416500.1	Wheat	nucleus	29.8	38.22
GSMUA_Achr11P...	Banana	nucleus	42.86	37.77
GSMUA_Achr1P10860_001	Banana	nucleus	44.49	37.46
HORVU2Hr1G089210.4	Barley	cytosol, mitochondrion, nucleus	42.86	37.23
GSMUA_Achr1P20530_001	Banana	cytosol, nucleus, plastid	42.04	37.18
GSMUA_Achr6P36550_001	Banana	nucleus	42.04	37.05
GSMUA_Achr8P18980_001	Banana	nucleus	40.82	36.63
EES05451	Sorghum	nucleus	43.67	35.43
KXG26719	Sorghum	nucleus	41.63	35.17
EES07725	Sorghum	cytosol	43.27	34.98
Zm00001d051956_P001	Maize	cytosol, mitochondrion, nucleus	42.45	34.9
Zm00001d018435_P001	Maize	cytosol, mitochondrion, nucleus	42.04	34.8
Zm00001d051140_P001	Maize	cytosol, mitochondrion, nucleus	41.63	34.69
Zm00001d003052_P001	Maize	cytosol, mitochondrion, nucleus	42.04	34.68
TraesCS2B01G399700.1	Wheat	cytosol, mitochondrion, nucleus	43.27	34.53
TraesCS2A01G382400.1	Wheat	nucleus	43.27	34.19
TraesCS2D01G378800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	43.67	33.97
Zm00001d025861_P001	Maize	cytosol, nucleus, plastid	40.41	33.79
CDY35197	Canola	nucleus	45.71	33.53
TraesCS6B01G416400.1	Wheat	nucleus	40.41	33.33
HORVU0Hr1G017490.7	Barley	nucleus	41.63	32.8
TraesCS6B01G416300.1	Wheat	nucleus	41.22	32.69
CDY38380	Canola	nucleus	45.71	32.56
Bra011037.1-P	Field mustard	nucleus	45.71	32.56
TraesCS6A01G378600.1	Wheat	nucleus	40.41	32.35
TraesCS6D01G362900.1	Wheat	nucleus	40.0	32.34
Bra024194.1-P	Field mustard	nucleus	45.71	31.91
CDY14236	Canola	cytosol	43.67	31.85
TraesCS6A01G378500.1	Wheat	nucleus	40.41	31.83
Os10t0477600-01	Rice	nucleus	42.04	31.79
TraesCS6D01G362800.1	Wheat	nucleus	40.41	31.73
CDX97445	Canola	cytosol	43.27	31.55
AT4G28530.1	Thale cress	nucleus	45.31	31.53
Bra010362.1-P	Field mustard	nucleus	43.67	30.84
VIT_19s0027g00230.t01	Wine grape	nucleus	36.33	30.17
Os02t0810900-01	Rice	nucleus	40.41	29.91
Os03t0109000-01	Rice	nucleus	35.92	29.63
VIT_17s0000g03660.t01	Wine grape	nucleus	30.2	22.63
VIT_04s0008g02710.t01	Wine grape	nucleus	28.98	21.85
VIT_17s0000g06400.t01	Wine grape	nucleus	31.84	21.67
VIT_19s0014g02200.t01	Wine grape	nucleus	31.43	21.21
VIT_08s0007g07640.t01	Wine grape	nucleus	31.43	19.11
VIT_14s0108g01070.t01	Wine grape	nucleus	30.2	17.58
VIT_18s0122g00800.t01	Wine grape	nucleus	30.2	17.41
CDY51708	Canola	nucleus	13.88	17.09
CDX92880	Canola	nucleus	13.47	16.67

Protein Annotations

EntrezGene:100254997	wikigene:100254997	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CCB60131	ProteinID:CCB60131.1
UniProt:F6HZL6	EMBL:FN596502	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	EntrezGene:LOC100254997	wikigene:LOC100254997	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF4	SUPFAM:SSF101941	UniParc:UPI000210A55A	ArrayExpress:VIT_07s0005g03610
EnsemblPlantsGene:VIT_07s0005g03610	EnsemblPlants:VIT_07s0005g03610.t01	RefSeq:XP_002272734	RefSeq:XP_002272734.2	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:6501704..6503940

Molecular Weight (calculated)

28173.1 Da

IEP (calculated)

8.467

GRAVY (calculated)

-0.611

Length

245 amino acids

Sequence
(BLAST)

001: MRWFEFIYKG HHKPNIRFFC YVAKLNSTEW YFFSFRDRKY ATGYRTNRAT TSGYWKATGK DRPVLNPTTH EVVGMRKTLV FYRNRAPNGI KTGWIMHEFR
101: LETPHMPPKE DWVLCRVFHK TKSESSSKLS PQYVFDTTAS ASSPPTHDQT LPCGYQQIPS FSPTHPHQNH DQTTLLNLAV LNPNLVHFAS QEMNPCAAAN
201: EINSKGSGAD EYGFLWDMSC SLGDGVPSSN LEDMRFEENN SIVFL

Best Arabidopsis Sequence Match ( AT4G28530.1 )
(BLAST)

001: MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDHGD VDDDDDDVDE ALKGSTDLVE IDLHICEPWE LPDVAKLNAK EWYFFSFRDR KYATGYRTNR
101: ATVSGYWKAT GKDRTVMDPR TRQLVGMRKT LVFYRNRAPN GIKTTWIMHE FRLECPNIPP KEDWVLCRVF NKGRDSSLQD NNYYNNDNQT QRLEVNDAPD
201: LNYNNQLPPL LSSPPHNHQH EKMKIQVCDQ WEQLMKQPSR TTGHPYHHHC HHQTIACGWE QMMIGSLSSP SSHGPDHESL LNLLYVDNNN SVNISGDHHQ
301: NYEKILLSSL DMTSLDHDKT CMGSSSDGGM VSDLHMECGG LSFETENILA FQ

Arabidopsis Description

anac074At4g28530 [Source:UniProtKB/TrEMBL;Acc:Q8GUJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.