Factsheet for Solyc09g025310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026644	Potato	cytosol, nucleus, peroxisome	93.7	91.34
CDY51707	Canola	cytosol	43.33	74.05
CDX92881	Canola	cytosol	42.96	71.17
KRG95684	Soybean	cytosol, nucleus, peroxisome	61.48	56.46
KRH67403	Soybean	cytosol, nucleus, plastid	61.85	56.42
Solyc06g008360.2.1	Tomato	nucleus	58.89	56.38
KRH32193	Soybean	cytosol, nucleus, plastid	61.11	55.74
TraesCS6B01G416500.1	Wheat	nucleus	38.52	54.45
GSMUA_AchrUn_...	Banana	nucleus	52.96	49.31
Os04t0515900-01	Rice	nucleus	50.74	49.28
GSMUA_Achr6P36550_001	Banana	nucleus	50.74	49.28
GSMUA_Achr5P18670_001	Banana	nucleus	49.63	49.08
GSMUA_Achr11P...	Banana	nucleus	47.41	48.85
GSMUA_Achr8P18980_001	Banana	nucleus	49.26	48.72
GSMUA_Achr1P20530_001	Banana	cytosol, nucleus, plastid	49.63	48.38
GSMUA_Achr11P...	Banana	nucleus	49.26	47.84
GSMUA_Achr1P10860_001	Banana	nucleus	50.74	47.08
HORVU2Hr1G089210.4	Barley	cytosol, mitochondrion, nucleus	48.89	46.81
GSMUA_AchrUn_...	Banana	nucleus	43.33	45.53
VIT_07s0005g03610.t01	Wine grape	mitochondrion, nucleus	40.74	44.9
Zm00001d003052_P001	Maize	cytosol, mitochondrion, nucleus	49.26	44.78
CDY35197	Canola	nucleus	55.19	44.61
EES05451	Sorghum	nucleus	48.52	43.38
Zm00001d025861_P001	Maize	cytosol, nucleus, plastid	47.04	43.34
CDY38380	Canola	nucleus	55.19	43.31
Bra011037.1-P	Field mustard	nucleus	55.19	43.31
Zm00001d018435_P001	Maize	cytosol, mitochondrion, nucleus	47.41	43.24
TraesCS6B01G416400.1	Wheat	nucleus	47.41	43.1
TraesCS6D01G362900.1	Wheat	nucleus	48.15	42.9
AT4G28530.1	Thale cress	nucleus	55.93	42.9
TraesCS6A01G378600.1	Wheat	nucleus	48.52	42.81
KXG26719	Sorghum	nucleus	45.93	42.76
TraesCS2B01G399700.1	Wheat	cytosol, mitochondrion, nucleus	48.52	42.67
Zm00001d051140_P001	Maize	cytosol, mitochondrion, nucleus	46.3	42.52
TraesCS6B01G416300.1	Wheat	nucleus	48.52	42.39
CDY14236	Canola	cytosol	52.59	42.26
TraesCS2A01G382400.1	Wheat	nucleus	48.52	42.26
TraesCS2D01G378800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	49.26	42.22
CDX97445	Canola	cytosol	52.22	41.96
EES07725	Sorghum	cytosol	47.04	41.91
HORVU0Hr1G017490.7	Barley	nucleus	48.15	41.8
Bra024194.1-P	Field mustard	nucleus	54.07	41.6
TraesCS6D01G362800.1	Wheat	nucleus	47.78	41.35
Zm00001d051956_P001	Maize	cytosol, mitochondrion, nucleus	45.56	41.28
Bra010362.1-P	Field mustard	nucleus	52.96	41.21
TraesCS6A01G378500.1	Wheat	nucleus	46.67	40.51
Os02t0810900-01	Rice	nucleus	47.41	38.67
Os10t0477600-01	Rice	nucleus	46.3	38.58
Os03t0109000-01	Rice	nucleus	38.15	34.68
Solyc07g066330.2.1	Tomato	nucleus	39.63	31.29
Solyc03g115850.2.1	Tomato	nucleus	35.56	29.45
Solyc02g088180.2.1	Tomato	cytosol	33.7	28.53
Solyc08g006020.2.1	Tomato	nucleus	31.85	28.48
Solyc12g036480.1.1	Tomato	nucleus	33.7	27.91
Solyc06g069710.2.1	Tomato	nucleus	34.44	27.43
Solyc07g062840.2.1	Tomato	nucleus	34.44	26.42
Solyc08g074300.2.1	Tomato	nucleus	32.59	25.81
Solyc06g069100.1.1	Tomato	nucleus	32.59	17.71
CDX92880	Canola	nucleus	12.22	16.67
CDY51708	Canola	nucleus	12.22	16.58

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	UniProt:K4CSJ2	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF4	SUPFAM:SSF101941	EnsemblPlantsGene:Solyc09g025310.2	EnsemblPlants:Solyc09g025310.2.1	UniParc:UPI000276C6EC
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:72471241..72475621

Molecular Weight (calculated)

31369.9 Da

IEP (calculated)

5.387

GRAVY (calculated)

-0.656

Length

270 amino acids

Sequence
(BLAST)

001: MGLRDIGATL PPGFRFYPSD EELVCHYLFK KIANEDVLKG TLIEIDLHTC EPWQLPEVAK LNSSEWYFFS FRDRKYATGF RTNRATISGY WKATGKDRTV
101: VDPKTRSIVG MRKTLVFYMN RAPNGIKTGW IMHEFRLENP HIPPKEDWVL CRVFYKAKVE NNNNNDNNNT FSNTQNMYEV GVNTSPNIDQ SHIALPYTAI
201: SQSQKLFDLL EPNNNQSSYL QLMSQEMKEP QSNDEMVEND EYGFLLDMNF EDPNIQDGSR SAFEHWGHVI

Best Arabidopsis Sequence Match ( AT4G28530.1 )
(BLAST)

001: MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDHGD VDDDDDDVDE ALKGSTDLVE IDLHICEPWE LPDVAKLNAK EWYFFSFRDR KYATGYRTNR
101: ATVSGYWKAT GKDRTVMDPR TRQLVGMRKT LVFYRNRAPN GIKTTWIMHE FRLECPNIPP KEDWVLCRVF NKGRDSSLQD NNYYNNDNQT QRLEVNDAPD
201: LNYNNQLPPL LSSPPHNHQH EKMKIQVCDQ WEQLMKQPSR TTGHPYHHHC HHQTIACGWE QMMIGSLSSP SSHGPDHESL LNLLYVDNNN SVNISGDHHQ
301: NYEKILLSSL DMTSLDHDKT CMGSSSDGGM VSDLHMECGG LSFETENILA FQ

Arabidopsis Description

anac074At4g28530 [Source:UniProtKB/TrEMBL;Acc:Q8GUJ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.