Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g087400.1.1 | |
| Solyc07g053630.2.1 | |
| Solyc10g008160.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G29035.1 | Solyc02g087400.1.1 | AT2G47450.1 | 21798944 |
| AT5G39610.1 | Solyc07g053630.2.1 | AT5G44190.1 | 23459204 |
| AT5G39610.1 | Solyc10g008160.2.1 | AT5G44190.1 | 23459204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003380 | Potato | nucleus | 94.67 | 93.5 |
| AT5G39610.1 | Thale cress | cytosol | 53.6 | 60.0 |
| CDY66026 | Canola | cytoskeleton, cytosol, nucleus | 48.59 | 59.85 |
| CDY30258 | Canola | nucleus | 51.1 | 56.4 |
| Bra025658.1-P | Field mustard | nucleus | 50.78 | 56.06 |
| CDX74442 | Canola | nucleus | 50.78 | 56.06 |
| Bra028435.1-P | Field mustard | nucleus | 50.47 | 55.9 |
| CDX67433 | Canola | nucleus | 50.47 | 55.9 |
| AT3G29035.1 | Thale cress | nucleus | 55.49 | 55.66 |
| CDY37008 | Canola | nucleus | 50.16 | 55.56 |
| Bra036223.1-P | Field mustard | nucleus | 56.43 | 54.88 |
| CDX86391 | Canola | cytoskeleton, cytosol, nucleus | 52.98 | 54.69 |
| Bra025374.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 52.98 | 54.69 |
| CDX85242 | Canola | cytosol | 54.55 | 54.21 |
| Solyc03g115850.2.1 | Tomato | nucleus | 52.98 | 51.84 |
| Solyc06g069710.2.1 | Tomato | nucleus | 54.86 | 51.62 |
| CDY20001 | Canola | cytoskeleton, cytosol, nucleus | 55.17 | 47.31 |
| Solyc08g006020.2.1 | Tomato | nucleus | 40.75 | 43.05 |
| Solyc07g062840.2.1 | Tomato | nucleus | 43.57 | 39.49 |
| Solyc08g074300.2.1 | Tomato | nucleus | 40.75 | 38.12 |
| GSMUA_Achr7P11500_001 | Banana | nucleus | 40.13 | 37.65 |
| Solyc12g036480.1.1 | Tomato | nucleus | 36.36 | 35.58 |
| Solyc06g008360.2.1 | Tomato | nucleus | 30.09 | 34.04 |
| Solyc09g025310.2.1 | Tomato | nucleus | 28.53 | 33.7 |
| Solyc07g066330.2.1 | Tomato | nucleus | 35.11 | 32.75 |
| Solyc06g069100.1.1 | Tomato | nucleus | 40.13 | 25.75 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 |
| InterPro:IPR036093 | UniProt:K4BBX4 | EMBL:KT740994 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 |
| PFscan:PS51005 | PANTHER:PTHR31744 | PANTHER:PTHR31744:SF7 | SUPFAM:SSF101941 | EnsemblPlantsGene:Solyc02g088180.2 | EnsemblPlants:Solyc02g088180.2.1 |
| UniParc:UPI00027684D8 | SEG:seg | : | : | : | : |
Description
NAC2-domain containing protein [Source:UniProtKB/TrEMBL;Acc:K4BBX4]
Coordinates
chr2:+:50337248..50338778
Molecular Weight (calculated)
36313.9 Da
IEP (calculated)
6.982
GRAVY (calculated)
-0.691
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIVCGFGGR EEEMELPPGF RFHPTDEELI THYLAPKVLD SGFCAIAIGE VDLNKVEPWD LPWKAKMGEK EWYFFCMRDK KYPTGQRTNR ATEAGYWKAT
101: GKDKEIFKSK TLVGMKKTLV FYKGRAPRGE KTNWVMHEYR LDGKYSIHNL PKTAKNECVI CRIFKKNSGG KKIAISNLTR SDSITDNSRS SNLPPLMDLS
201: PYNKITTTAR SSGETCNSHV TCFSDSMEDQ KPQTYDHHHL LSSSPVSVDF PQNVPNDSMT YMGNFQYGDS GLMQDNSIMR LLIDNNYGSE SKQSLRGYED
301: HDINISSTGP VDIDCLWNY
101: GKDKEIFKSK TLVGMKKTLV FYKGRAPRGE KTNWVMHEYR LDGKYSIHNL PKTAKNECVI CRIFKKNSGG KKIAISNLTR SDSITDNSRS SNLPPLMDLS
201: PYNKITTTAR SSGETCNSHV TCFSDSMEDQ KPQTYDHHHL LSSSPVSVDF PQNVPNDSMT YMGNFQYGDS GLMQDNSIMR LLIDNNYGSE SKQSLRGYED
301: HDINISSTGP VDIDCLWNY
001: METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD TSFSAKAIGE VDLNKSEPWE LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT
101: GKDKEIYRGK SLVGMKKTLV FYRGRAPKGQ KTNWVMHEYR LEGKFSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR IGSLGTDFNP SLLPSLTDSS
201: PYNDKTKTEP VYVPCFSNQT DQNQGTTLNC FSSPVLNSIQ ADIFHRIPLY QTQSLQVSMN LQSPVLTQEH SVLHAMIENN RRQSLKTMSV SQETGVSTDM
301: NTDISSDFEF GKRRFDSQED PSSSTGPVDL EPFWNY
101: GKDKEIYRGK SLVGMKKTLV FYRGRAPKGQ KTNWVMHEYR LEGKFSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR IGSLGTDFNP SLLPSLTDSS
201: PYNDKTKTEP VYVPCFSNQT DQNQGTTLNC FSSPVLNSIQ ADIFHRIPLY QTQSLQVSMN LQSPVLTQEH SVLHAMIENN RRQSLKTMSV SQETGVSTDM
301: NTDISSDFEF GKRRFDSQED PSSSTGPVDL EPFWNY
Arabidopsis Description
NAC100NAC domain-containing protein 100 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.