Factsheet for Bra025374.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014106.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29035.1	Bra014106.1-P	AT2G47450.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86391	Canola	cytoskeleton, cytosol, nucleus	100.0	100.0
Bra036223.1-P	Field mustard	nucleus	80.58	75.91
AT3G29035.1	Thale cress	nucleus	69.26	67.3
Bra025658.1-P	Field mustard	nucleus	60.19	64.36
Bra028435.1-P	Field mustard	nucleus	59.87	64.24
Solyc02g088180.2.1	Tomato	cytosol	54.69	52.98
Bra009246.1-P	Field mustard	nucleus	47.9	52.3
PGSC0003DMT400003380	Potato	nucleus	54.05	51.7
Bra028685.1-P	Field mustard	nucleus	49.51	48.73
Bra012960.1-P	Field mustard	nucleus	49.84	47.09
Bra029313.1-P	Field mustard	nucleus	47.9	45.54
Bra021592.1-P	Field mustard	nucleus	37.54	38.28
Bra006449.1-P	Field mustard	nucleus	41.42	38.1
Bra037585.1-P	Field mustard	nucleus	36.89	38.0
Bra023669.1-P	Field mustard	nucleus	41.1	37.8
Bra001586.1-P	Field mustard	nucleus	37.54	37.54
Bra032095.1-P	Field mustard	nucleus	38.19	37.22
Bra002148.1-P	Field mustard	nucleus	40.45	37.2
Bra001705.1-P	Field mustard	nucleus	35.92	37.12
Bra022319.1-P	Field mustard	nucleus	36.25	36.48
Bra040153.1-P	Field mustard	nucleus	40.45	36.44
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	40.45	36.34
Bra007855.1-P	Field mustard	nucleus	36.89	35.96
Bra003023.1-P	Field mustard	nucleus	41.1	35.57
GSMUA_Achr7P11500_001	Banana	nucleus	38.84	35.29
Bra034713.1-P	Field mustard	nucleus	31.07	34.91
Bra001480.1-P	Field mustard	nucleus	31.07	34.66
Bra022685.1-P	Field mustard	nucleus	41.1	34.6
Bra008259.1-P	Field mustard	cytosol	35.6	34.38
Bra015750.1-P	Field mustard	cytosol	36.57	33.73
Bra030820.1-P	Field mustard	nucleus	32.36	31.15
Bra011037.1-P	Field mustard	nucleus	29.45	26.45
Bra010362.1-P	Field mustard	nucleus	29.45	26.22
Bra024194.1-P	Field mustard	nucleus	28.48	25.07

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EnsemblPlantsGene:Bra025374	EnsemblPlants:Bra025374.1	EnsemblPlants:Bra025374.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	UniProt:M4E9B8	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF7	SUPFAM:SSF101941
UniParc:UPI000253FAE5	:	:	:	:	:

Description

AT3G29035 (E=4e-116) ATNAC3, ANAC059 | ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3); protein heterodimerization/ transcription factor

Coordinates

chrA06:-:21885548..21886741

Molecular Weight (calculated)

34938.5 Da

IEP (calculated)

5.650

GRAVY (calculated)

-0.408

Length

309 amino acids

Sequence
(BLAST)

001: MDYEVSRTGE IIEDSEQIDL LPGFRFHPTD EELISHYLRP KVLNTVFSAV AIGEVDLNKV EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATRAGY
101: WKATGKDKEI FKEKALVGMK KTLVFYEGRA PKGVKTNWVI HEYRLDGIYA NDNLPVTAKN EWVISRVFQK GADGKKMHLY GLTMLGSGIN QVEPAGLPPL
201: SNVTCFSDQT IVEDKSHISE LKDECNVTML GSSSTHSIPN IGSMLYSDPV FMQDNSSILM MLLDSEETQF KKNIQGFGTA EKELTTSSWH DHGLAGSAGS
301: VEVDCYWNF

Best Arabidopsis Sequence Match ( AT3G29035.1 )
(BLAST)

001: MDYKVSRSGE IVEGEVEDSE KIDLPPGFRF HPTDEELITH YLRPKVVNSF FSAIAIGEVD LNKVEPWDLP WKAKLGEKEW YFFCVRDRKY PTGLRTNRAT
101: KAGYWKATGK DKEIFKGKSL VGMKKTLVFY KGRAPKGVKT NWVMHEYRLE GKFAIDNLSK TAKNECVISR VFHTRTDGTK EHMSVGLPPL MDSSPYLKSR
201: GQDSLAGTTL GGLLSHVTYF SDQTTDDKSL VADFKTTMFG SGSTNFLPNI GSLLDFDPLF LQNNSSVLKM LLDNEETQFK KNLHNSGSSE SELTASSWQG
301: HNSYGSTGPV NLDCVWKF

Arabidopsis Description

NAC59NAC domain-containing protein 59 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.