Factsheet for Bra022685.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53950.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28805	Canola	nucleus	100.0	100.0
Bra003023.1-P	Field mustard	nucleus	87.19	89.64
AT5G53950.1	Thale cress	nucleus	85.01	83.2
KRH22042	Soybean	nucleus	53.95	56.25
KRH27280	Soybean	nucleus	51.77	55.39
Solyc07g062840.2.1	Tomato	nucleus	51.77	53.98
VIT_19s0014g02200.t01	Wine grape	nucleus	53.13	53.72
KRH26232	Soybean	nucleus	51.23	51.37
KRH55187	Soybean	nucleus	52.32	51.2
PGSC0003DMT400032280	Potato	nucleus	39.78	50.87
Bra001586.1-P	Field mustard	nucleus	41.42	49.19
GSMUA_Achr10P...	Banana	nucleus	43.6	48.19
Bra021592.1-P	Field mustard	nucleus	39.24	47.52
Bra009246.1-P	Field mustard	nucleus	36.24	47.0
Zm00001d035266_P001	Maize	nucleus	44.14	45.38
Bra028435.1-P	Field mustard	nucleus	35.42	45.14
Bra025658.1-P	Field mustard	nucleus	35.42	44.98
Bra037585.1-P	Field mustard	nucleus	36.51	44.67
Bra001705.1-P	Field mustard	nucleus	35.69	43.81
Bra028685.1-P	Field mustard	nucleus	37.33	43.63
Bra022319.1-P	Field mustard	nucleus	36.24	43.32
Os06t0344900-00	Rice	cytosol, nucleus, plastid	43.87	43.16
Bra012960.1-P	Field mustard	nucleus	37.87	42.51
Bra032095.1-P	Field mustard	nucleus	36.51	42.27
Bra007855.1-P	Field mustard	nucleus	36.24	41.96
Bra029313.1-P	Field mustard	nucleus	37.06	41.85
TraesCS7A01G334800.1	Wheat	nucleus	41.14	41.6
TraesCS7B01G246300.1	Wheat	nucleus	40.87	41.44
TraesCS7D01G342300.1	Wheat	nucleus	40.87	41.44
Bra025374.1-P	Field mustard	cytoskeleton, cytosol, nucleus	34.6	41.1
Zm00001d041791_P001	Maize	nucleus	40.87	40.76
Bra036223.1-P	Field mustard	nucleus	36.24	40.55
Bra008259.1-P	Field mustard	cytosol	34.6	39.69
HORVU7Hr1G082420.2	Barley	nucleus	40.87	38.27
Bra002148.1-P	Field mustard	nucleus	34.33	37.5
Bra015750.1-P	Field mustard	cytosol	34.06	37.31
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	34.88	37.21
Bra001480.1-P	Field mustard	nucleus	27.79	36.82
Bra023669.1-P	Field mustard	nucleus	33.52	36.61
Bra006449.1-P	Field mustard	nucleus	33.52	36.61
KXG23228	Sorghum	plastid	43.6	36.04
Bra040153.1-P	Field mustard	nucleus	33.52	35.86
Bra034713.1-P	Field mustard	nucleus	26.7	35.64
Bra030820.1-P	Field mustard	nucleus	28.88	33.02
Bra024194.1-P	Field mustard	nucleus	26.43	27.64
Bra011037.1-P	Field mustard	nucleus	25.89	27.62
Bra010362.1-P	Field mustard	nucleus	25.89	27.38

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EnsemblPlantsGene:Bra022685	EnsemblPlants:Bra022685.1	EnsemblPlants:Bra022685.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	UniProt:M4E1N5	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF22	SUPFAM:SSF101941
UniParc:UPI0002546A33	SEG:seg	:	:	:	:

Description

AT5G53950 (E=4e-162) CUC2, ANAC098 | CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor

Coordinates

chrA02:+:8028747..8030503

Molecular Weight (calculated)

40983.8 Da

IEP (calculated)

8.518

GRAVY (calculated)

-0.571

Length

367 amino acids

Sequence
(BLAST)

001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVI EGCFSSRAIA EVDLNKSEPW QLPGKAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIYSS KTCALVGMKK TLVFYKGRAP KGEKSSWVMH EYRLEGKFSY HFISRSSKDE WVISRVFKKP GLANTGGSAE ASISVSNGTG TSKKTKIPSN
201: ISTNYREQPS SPSSVSLPPL LDPTTTLGYT DSSWSYDSRS TNTPVITTAI TEHVSCFSTA TTTTALGLDV DVDSFNHLLP PVPPGFDPFP RFVSRNVSSL
301: SNFRSFQENF NHFPYYGSSS ASTMTTPVNL PSSHGGTGMN YWLQTTAEEN ETKAGLLNGG LDCVWNY

Best Arabidopsis Sequence Match ( AT5G53950.1 )
(BLAST)

001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY

Arabidopsis Description

NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.