Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53950.1 | KRH14106 | AT5G35750.1 | 18642946 |
| AT5G53950.1 | KRH74010 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH55187 | Soybean | nucleus | 92.35 | 90.13 |
| KRH27280 | Soybean | nucleus | 62.84 | 67.06 |
| KRH22042 | Soybean | nucleus | 63.39 | 65.91 |
| VIT_19s0014g02200.t01 | Wine grape | nucleus | 63.66 | 64.19 |
| Solyc07g062840.2.1 | Tomato | nucleus | 59.56 | 61.93 |
| PGSC0003DMT400032280 | Potato | nucleus | 45.08 | 57.49 |
| GSMUA_Achr10P... | Banana | nucleus | 49.45 | 54.52 |
| Bra003023.1-P | Field mustard | nucleus | 51.09 | 52.38 |
| CDX96262 | Canola | nucleus | 51.64 | 51.5 |
| AT5G53950.1 | Thale cress | nucleus | 52.73 | 51.47 |
| Bra022685.1-P | Field mustard | nucleus | 51.37 | 51.23 |
| CDY28805 | Canola | nucleus | 51.37 | 51.23 |
| CDY20103 | Canola | nucleus | 41.26 | 49.84 |
| Bra021592.1-P | Field mustard | nucleus | 41.26 | 49.84 |
| CDY32316 | Canola | nucleus | 41.53 | 49.51 |
| AT3G15170.1 | Thale cress | nucleus | 41.8 | 49.35 |
| CDX75813 | Canola | nucleus | 41.26 | 49.03 |
| Bra001586.1-P | Field mustard | nucleus | 41.26 | 48.87 |
| CDX82444 | Canola | nucleus | 41.26 | 48.87 |
| Zm00001d035266_P001 | Maize | nucleus | 46.17 | 47.34 |
| KRH41635 | Soybean | nucleus | 38.8 | 45.37 |
| KRH60340 | Soybean | nucleus | 39.62 | 45.17 |
| KRH48487 | Soybean | nucleus | 39.34 | 44.44 |
| Os06t0344900-00 | Rice | cytosol, nucleus, plastid | 44.81 | 43.97 |
| CDX98529 | Canola | mitochondrion | 32.79 | 43.96 |
| CDX99695 | Canola | mitochondrion | 32.79 | 43.96 |
| KRH03497 | Soybean | nucleus | 41.26 | 43.14 |
| KRH56898 | Soybean | nucleus | 41.26 | 43.14 |
| Zm00001d041791_P001 | Maize | nucleus | 43.17 | 42.93 |
| KRH39185 | Soybean | nucleus | 38.8 | 42.9 |
| TraesCS7D01G342300.1 | Wheat | nucleus | 42.35 | 42.82 |
| TraesCS7B01G246300.1 | Wheat | nucleus | 42.08 | 42.54 |
| TraesCS7A01G334800.1 | Wheat | nucleus | 42.08 | 42.42 |
| KRH13649 | Soybean | nucleus | 33.61 | 40.59 |
| KRH61984 | Soybean | nucleus | 39.34 | 40.34 |
| KRH52643 | Soybean | cytoskeleton, cytosol, nucleus | 38.8 | 40.0 |
| KRH43817 | Soybean | nucleus | 32.51 | 39.4 |
| HORVU7Hr1G082420.2 | Barley | nucleus | 41.8 | 39.03 |
| KRH54575 | Soybean | nucleus | 37.98 | 38.94 |
| KRH16201 | Soybean | cytoskeleton, cytosol, nucleus | 39.34 | 38.61 |
| KRH63309 | Soybean | nucleus | 37.16 | 38.1 |
| KXG23228 | Sorghum | plastid | 45.63 | 37.61 |
| KRG93561 | Soybean | nucleus | 37.16 | 37.57 |
| KRH40061 | Soybean | nucleus | 36.89 | 37.19 |
| KRH60880 | Soybean | nucleus | 35.25 | 36.86 |
| KRH18465 | Soybean | nucleus | 35.52 | 36.31 |
| KRG94783 | Soybean | nucleus | 40.16 | 36.3 |
| KRH06738 | Soybean | nucleus | 39.89 | 35.87 |
| KRH01200 | Soybean | mitochondrion, nucleus | 36.07 | 34.02 |
| KRH51562 | Soybean | nucleus | 34.15 | 33.42 |
| KRH70130 | Soybean | nucleus | 37.43 | 33.41 |
| KRH32193 | Soybean | cytosol, nucleus, plastid | 26.78 | 33.11 |
| KRG95684 | Soybean | cytosol, nucleus, peroxisome | 26.5 | 32.99 |
| KRH08479 | Soybean | nucleus | 36.89 | 32.93 |
| KRH67403 | Soybean | cytosol, nucleus, plastid | 26.5 | 32.77 |
Protein Annotations
| EntrezGene:100778689 | MapMan:15.5.17 | Gene3D:3.30.310.150 | EMBL:ACUP02007694 | EnsemblPlantsGene:GLYMA_12G161700 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | UniProt:I1LT65 | InterPro:IPR003441 | InterPro:IPR036093 | EnsemblPlants:KRH26232 |
| ProteinID:KRH26232 | ProteinID:KRH26232.1 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR31744 | PANTHER:PTHR31744:SF22 | SUPFAM:SSF101941 | UniParc:UPI000233C182 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr12:+:30307162..30309990
Molecular Weight (calculated)
40963.6 Da
IEP (calculated)
7.393
GRAVY (calculated)
-0.646
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSYYHQHHN PHFDNNNEPH LPPGFRFHPT DEELITYYLL KKVLDSSFTG RAIVEVDLNK CEPWELPEKA KMGEKEWYFY SLRDRKYPTG LRTNRATEAG
101: YWKATGKDRE IYSSKTCSLV GMKKTLVFYR GRAPKGEKSN WVMHEYRLEG KFAYHYLSRS SKEEWVISRV FQKNTTGGGS TVSSASAATT GGSSKKTRMT
201: TSNNSSNMSL CPEPGSPSSI YLPPLLESSP YAAAAATFND RERCSFDSAA NNNQREHVSC FSTISGAAFD HLVPSPEPPL DPSARFHRNN NNNVGVGIST
301: FPCLRSLHDN LNLPFFFSPT GHISSAEVAS FGAVGNWTAA PEEHRMADSG SGMTIVPSEL DCMWDY
101: YWKATGKDRE IYSSKTCSLV GMKKTLVFYR GRAPKGEKSN WVMHEYRLEG KFAYHYLSRS SKEEWVISRV FQKNTTGGGS TVSSASAATT GGSSKKTRMT
201: TSNNSSNMSL CPEPGSPSSI YLPPLLESSP YAAAAATFND RERCSFDSAA NNNQREHVSC FSTISGAAFD HLVPSPEPPL DPSARFHRNN NNNVGVGIST
301: FPCLRSLHDN LNLPFFFSPT GHISSAEVAS FGAVGNWTAA PEEHRMADSG SGMTIVPSEL DCMWDY
001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
Arabidopsis Description
NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.