Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53950.1 | KRH14106 | AT5G35750.1 | 18642946 |
| AT5G53950.1 | KRH74010 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH22042 | Soybean | nucleus | 91.55 | 89.2 |
| KRH26232 | Soybean | nucleus | 67.06 | 62.84 |
| KRH55187 | Soybean | nucleus | 67.93 | 62.13 |
| Solyc07g062840.2.1 | Tomato | nucleus | 62.97 | 61.36 |
| PGSC0003DMT400032280 | Potato | nucleus | 48.98 | 58.54 |
| GSMUA_Achr10P... | Banana | nucleus | 51.02 | 52.71 |
| AT5G53950.1 | Thale cress | nucleus | 57.43 | 52.53 |
| Bra003023.1-P | Field mustard | nucleus | 54.23 | 52.1 |
| CDX96262 | Canola | nucleus | 55.69 | 52.04 |
| CDY28805 | Canola | nucleus | 55.39 | 51.77 |
| Bra022685.1-P | Field mustard | nucleus | 55.39 | 51.77 |
| CDX75813 | Canola | nucleus | 45.19 | 50.32 |
| CDX82444 | Canola | nucleus | 45.19 | 50.16 |
| Bra001586.1-P | Field mustard | nucleus | 45.19 | 50.16 |
| Bra021592.1-P | Field mustard | nucleus | 44.02 | 49.84 |
| CDY20103 | Canola | nucleus | 44.02 | 49.84 |
| AT3G15170.1 | Thale cress | nucleus | 44.9 | 49.68 |
| CDY32316 | Canola | nucleus | 44.31 | 49.51 |
| Zm00001d035266_P001 | Maize | nucleus | 49.27 | 47.34 |
| Os06t0344900-00 | Rice | cytosol, nucleus, plastid | 48.98 | 45.04 |
| KRH41635 | Soybean | nucleus | 40.23 | 44.09 |
| KRH56898 | Soybean | nucleus | 44.9 | 44.0 |
| CDX99695 | Canola | mitochondrion | 34.99 | 43.96 |
| CDX98529 | Canola | mitochondrion | 34.99 | 43.96 |
| KRH03497 | Soybean | nucleus | 44.61 | 43.71 |
| TraesCS7B01G246300.1 | Wheat | nucleus | 46.06 | 43.65 |
| KRH60340 | Soybean | nucleus | 40.82 | 43.61 |
| TraesCS7D01G342300.1 | Wheat | nucleus | 45.77 | 43.37 |
| TraesCS7A01G334800.1 | Wheat | nucleus | 45.77 | 43.25 |
| KRH48487 | Soybean | nucleus | 40.23 | 42.59 |
| KRH39185 | Soybean | nucleus | 40.82 | 42.3 |
| Zm00001d041791_P001 | Maize | nucleus | 44.61 | 41.58 |
| HORVU7Hr1G082420.2 | Barley | nucleus | 45.48 | 39.8 |
| KRH54575 | Soybean | nucleus | 41.4 | 39.78 |
| KRH63309 | Soybean | nucleus | 41.11 | 39.5 |
| KRH61984 | Soybean | nucleus | 40.23 | 38.66 |
| KRH52643 | Soybean | cytoskeleton, cytosol, nucleus | 39.65 | 38.31 |
| KRH40061 | Soybean | nucleus | 40.52 | 38.29 |
| KRH13649 | Soybean | nucleus | 33.82 | 38.28 |
| KRG93561 | Soybean | nucleus | 39.94 | 37.85 |
| KRH43817 | Soybean | nucleus | 33.24 | 37.75 |
| KRH18465 | Soybean | nucleus | 39.07 | 37.43 |
| KXG23228 | Sorghum | plastid | 48.4 | 37.39 |
| KRH16201 | Soybean | cytoskeleton, cytosol, nucleus | 39.94 | 36.73 |
| KRH60880 | Soybean | nucleus | 37.03 | 36.29 |
| KRH01200 | Soybean | mitochondrion, nucleus | 39.65 | 35.05 |
| KRG94783 | Soybean | nucleus | 41.11 | 34.81 |
| KRH06738 | Soybean | nucleus | 41.11 | 34.64 |
| KRH51562 | Soybean | nucleus | 37.03 | 33.96 |
| KRH70130 | Soybean | nucleus | 40.52 | 33.9 |
| KRH08479 | Soybean | nucleus | 39.65 | 33.17 |
| KRG95684 | Soybean | cytosol, nucleus, peroxisome | 28.28 | 32.99 |
| KRH32193 | Soybean | cytosol, nucleus, plastid | 27.99 | 32.43 |
| KRH67403 | Soybean | cytosol, nucleus, plastid | 27.99 | 32.43 |
Protein Annotations
| EntrezGene:100815574 | MapMan:15.5.17 | Gene3D:3.30.310.150 | ProteinID:ACJ61505.1 | EMBL:ACUP02007796 | EnsemblPlantsGene:GLYMA_12G226500 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | UniProt:I1LV32 | InterPro:IPR003441 | InterPro:IPR036093 |
| EMBL:JX392401 | EnsemblPlants:KRH27280 | ProteinID:KRH27280 | ProteinID:KRH27280.1 | InterPro:NAC-dom | InterPro:NAC_dom_sf |
| PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 | PANTHER:PTHR31744:SF22 | SUPFAM:SSF101941 | UniParc:UPI000233CE88 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:-:38629959..38632784
Molecular Weight (calculated)
38413.9 Da
IEP (calculated)
8.085
GRAVY (calculated)
-0.570
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHTEAHLPP GFRFHPTDEE LITYYLLKKV LDSTFTGRAI AEVDLNKSEP WELPEKAKMG EKEWYFFSLR DRKYPTGLRT NRATEAGYWK ATGKDREIYS
101: SKTCSLVGMK KTLVFYRGRA PKGEKSNWVM HEYRLEGKFA YHYLSRNSED EWVISRVFRK SNTTPITNGG STMSASTNSK KTRINNTTSL IHEPGSPSSV
201: FLPPLLDSSP YTNTTTNTFT DHHNSSYDSA TKKEHVSCFS TIAAATAVVS PNNNFNNASF DLPPSQPLAT DPFARFQRNV GLSAFPSLRS LQDNLQLPFF
301: FSTAAAPPFS GGGSGDFLSW PVPEDGVSNM PLGVSELDCM WGY
101: SKTCSLVGMK KTLVFYRGRA PKGEKSNWVM HEYRLEGKFA YHYLSRNSED EWVISRVFRK SNTTPITNGG STMSASTNSK KTRINNTTSL IHEPGSPSSV
201: FLPPLLDSSP YTNTTTNTFT DHHNSSYDSA TKKEHVSCFS TIAAATAVVS PNNNFNNASF DLPPSQPLAT DPFARFQRNV GLSAFPSLRS LQDNLQLPFF
301: FSTAAAPPFS GGGSGDFLSW PVPEDGVSNM PLGVSELDCM WGY
001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
Arabidopsis Description
NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.