Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d014297_P006 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53950.1 | Zm00001d014297_P006 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0344900-00 | Rice | cytosol, nucleus, plastid | 74.51 | 71.31 |
| Zm00001d041791_P001 | Maize | nucleus | 72.55 | 70.38 |
| KXG23228 | Sorghum | plastid | 85.43 | 68.69 |
| TraesCS7A01G334800.1 | Wheat | nucleus | 68.91 | 67.77 |
| TraesCS7B01G246300.1 | Wheat | nucleus | 68.35 | 67.4 |
| TraesCS7D01G342300.1 | Wheat | nucleus | 68.35 | 67.4 |
| HORVU7Hr1G082420.2 | Barley | nucleus | 68.35 | 62.24 |
| GSMUA_Achr10P... | Banana | cytosol | 49.58 | 49.86 |
| KRH27280 | Soybean | nucleus | 47.34 | 49.27 |
| GSMUA_Achr10P... | Banana | nucleus | 45.1 | 48.49 |
| VIT_19s0014g02200.t01 | Wine grape | nucleus | 49.3 | 48.48 |
| KRH22042 | Soybean | nucleus | 47.34 | 48.01 |
| Solyc07g062840.2.1 | Tomato | nucleus | 46.22 | 46.88 |
| KRH55187 | Soybean | nucleus | 48.74 | 46.4 |
| KRH26232 | Soybean | nucleus | 47.34 | 46.17 |
| CDX75813 | Canola | nucleus | 38.94 | 45.13 |
| CDX82444 | Canola | nucleus | 38.94 | 44.98 |
| Bra001586.1-P | Field mustard | nucleus | 38.94 | 44.98 |
| AT3G15170.1 | Thale cress | nucleus | 38.66 | 44.52 |
| CDY20103 | Canola | nucleus | 37.53 | 44.22 |
| Bra021592.1-P | Field mustard | nucleus | 37.53 | 44.22 |
| CDY28805 | Canola | nucleus | 45.38 | 44.14 |
| Bra022685.1-P | Field mustard | nucleus | 45.38 | 44.14 |
| Bra003023.1-P | Field mustard | nucleus | 43.98 | 43.98 |
| CDY32316 | Canola | nucleus | 37.82 | 43.97 |
| CDX96262 | Canola | nucleus | 45.1 | 43.87 |
| AT5G53950.1 | Thale cress | nucleus | 45.38 | 43.2 |
| PGSC0003DMT400032280 | Potato | nucleus | 33.33 | 41.46 |
| Zm00001d033308_P001 | Maize | nucleus | 37.53 | 41.1 |
| CDX99695 | Canola | mitochondrion | 30.25 | 39.56 |
| CDX98529 | Canola | mitochondrion | 30.25 | 39.56 |
| Zm00001d013717_P001 | Maize | nucleus | 36.13 | 39.09 |
| Zm00001d050893_P001 | Maize | nucleus | 35.85 | 36.78 |
| Zm00001d005028_P001 | Maize | cytosol | 33.05 | 36.65 |
| Zm00001d022517_P001 | Maize | nucleus | 32.49 | 36.48 |
| Zm00001d014405_P001 | Maize | nucleus | 31.09 | 36.39 |
| Zm00001d024268_P001 | Maize | cytosol, nucleus, plastid | 28.57 | 36.17 |
| Zm00001d028995_P001 | Maize | cytosol | 34.17 | 34.76 |
| Zm00001d051140_P001 | Maize | cytosol, mitochondrion, nucleus | 28.57 | 34.69 |
| Zm00001d003414_P002 | Maize | cytosol, mitochondrion, nucleus | 35.29 | 34.52 |
| Zm00001d047554_P001 | Maize | cytoskeleton, cytosol, nucleus | 33.61 | 34.48 |
| Zm00001d020982_P001 | Maize | cytosol, mitochondrion, nucleus | 35.85 | 34.04 |
| Zm00001d006053_P001 | Maize | nucleus | 36.97 | 34.02 |
| Zm00001d016950_P002 | Maize | nucleus | 35.29 | 33.51 |
| Zm00001d002285_P001 | Maize | cytosol, nucleus, plastid | 29.41 | 33.12 |
| Zm00001d018435_P001 | Maize | cytosol, mitochondrion, nucleus | 27.45 | 33.11 |
| Zm00001d025861_P001 | Maize | cytosol, nucleus, plastid | 27.17 | 33.11 |
| Zm00001d003052_P001 | Maize | cytosol, mitochondrion, nucleus | 27.45 | 33.0 |
| Zm00001d052390_P001 | Maize | nucleus | 34.17 | 32.88 |
| Zm00001d041472_P001 | Maize | cytosol, nucleus, peroxisome | 30.81 | 32.45 |
| Zm00001d051956_P001 | Maize | cytosol, mitochondrion, nucleus | 26.89 | 32.21 |
| Zm00001d031463_P002 | Maize | mitochondrion | 34.45 | 29.15 |
| Zm00001d040189_P002 | Maize | mitochondrion, nucleus, peroxisome | 31.65 | 28.9 |
| Zm00001d008403_P001 | Maize | plastid | 25.21 | 27.95 |
Protein Annotations
| EntrezGene:103629107 | MapMan:15.5.17 | Gene3D:3.30.310.150 | ProteinID:AQK78590.1 | UniProt:B6TZM7 | EMBL:EU970442 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | EMBL:KJ727847 |
| InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 | PANTHER:PTHR31744:SF48 |
| SUPFAM:SSF101941 | UniParc:UPI000182F1F5 | EnsemblPlantsGene:Zm00001d035266 | EnsemblPlants:Zm00001d035266_P001 | EnsemblPlants:Zm00001d035266_T001 | SEG:seg |
Description
NAC-transcription factor 119CUC2%3B Putative NAC domain transcription factor superfamily protein
Coordinates
chr6:+:18673737..18675956
Molecular Weight (calculated)
37769.7 Da
IEP (calculated)
8.666
GRAVY (calculated)
-0.295
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MERFGLDGGG GGGELPPGFR FHPTDEELIT YYLLRKAVDG SFCGRAIAEI DLNKCEPWEL PDKAKMGEKE WYFYSLRDRK YPTGLRTNRA TVAGYWKATG
101: KDREIRSGRT GALVGMKKTL VFYRGRAPKG QKTHWVMHEY RLEGAYAYHF LPSSTRDEWV IARVFQKPGE VPPAARKHRL GALSSTTGTA AGDSCFSDST
201: SASIGGASSS STPGPLFASA AAAVANAGAA DGDTSSYCGG AANHGNLVTG RELVPCFSTA TINGPLVAAA LGIGQPYNAA PLPFEQQPPP PAFLPSLRSL
301: QDNLQLPPFL SAGGLGGGGA LHWLPAGGME VKVEGRSAPP QMAVGPGQLD GAFGWSF
101: KDREIRSGRT GALVGMKKTL VFYRGRAPKG QKTHWVMHEY RLEGAYAYHF LPSSTRDEWV IARVFQKPGE VPPAARKHRL GALSSTTGTA AGDSCFSDST
201: SASIGGASSS STPGPLFASA AAAVANAGAA DGDTSSYCGG AANHGNLVTG RELVPCFSTA TINGPLVAAA LGIGQPYNAA PLPFEQQPPP PAFLPSLRSL
301: QDNLQLPPFL SAGGLGGGGA LHWLPAGGME VKVEGRSAPP QMAVGPGQLD GAFGWSF
001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
Arabidopsis Description
NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.