Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012821_P003 | |
| Zm00001d014423_P002 | |
| Zm00001d030110_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04060.1 | Zm00001d012821_P003 | AT1G32230.1 | 19548978 |
| AT3G04060.1 | Zm00001d014423_P002 | AT1G32230.1 | 19548978 |
| AT3G04060.1 | Zm00001d030110_P001 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005028_P001 | Maize | cytosol | 60.65 | 69.88 |
| EES07908 | Sorghum | nucleus, peroxisome, plastid | 64.15 | 59.95 |
| CDY29982 | Canola | cytosol | 25.88 | 55.81 |
| GSMUA_Achr5P07600_001 | Banana | cytosol | 32.61 | 49.19 |
| GSMUA_Achr10P... | Banana | cytosol | 29.11 | 47.37 |
| Os12t0123800-01 | Rice | nucleus | 48.79 | 45.71 |
| TraesCS5A01G143100.1 | Wheat | nucleus | 46.63 | 42.93 |
| TraesCS5B01G141900.1 | Wheat | nucleus | 46.36 | 42.89 |
| TraesCS5D01G148900.1 | Wheat | nucleus | 46.36 | 42.79 |
| GSMUA_Achr3P18020_001 | Banana | nucleus | 31.54 | 39.93 |
| GSMUA_Achr9P16920_001 | Banana | cytosol | 32.88 | 39.87 |
| GSMUA_Achr7P18330_001 | Banana | nucleus | 32.08 | 38.64 |
| GSMUA_Achr3P09520_001 | Banana | cytosol | 32.34 | 37.74 |
| Os11t0127000-01 | Rice | nucleus | 29.38 | 36.95 |
| HORVU5Hr1G045640.7 | Barley | mitochondrion | 45.28 | 36.92 |
| Zm00001d022517_P001 | Maize | nucleus | 31.54 | 36.79 |
| Zm00001d033308_P001 | Maize | nucleus | 32.08 | 36.5 |
| Zm00001d047554_P001 | Maize | cytoskeleton, cytosol, nucleus | 34.23 | 36.49 |
| AT5G18270.1 | Thale cress | nucleus | 32.88 | 36.42 |
| CDY53250 | Canola | nucleus | 32.88 | 36.31 |
| Bra023669.1-P | Field mustard | nucleus | 32.88 | 36.31 |
| CDY02636 | Canola | nucleus | 32.88 | 36.2 |
| Bra002148.1-P | Field mustard | nucleus | 32.61 | 36.01 |
| GSMUA_Achr6P32290_001 | Banana | nucleus | 33.42 | 35.84 |
| GSMUA_Achr6P08600_001 | Banana | nucleus | 33.15 | 35.45 |
| Zm00001d050893_P001 | Maize | nucleus | 33.15 | 35.34 |
| Zm00001d028995_P001 | Maize | cytosol | 33.42 | 35.33 |
| CDX70804 | Canola | nucleus | 32.08 | 35.31 |
| Zm00001d013717_P001 | Maize | nucleus | 31.27 | 35.15 |
| Bra006449.1-P | Field mustard | nucleus | 31.81 | 35.12 |
| CDY51238 | Canola | nucleus | 31.81 | 35.01 |
| Zm00001d035266_P001 | Maize | nucleus | 32.88 | 34.17 |
| AT3G04060.1 | Thale cress | nucleus | 31.0 | 34.02 |
| CDY50879 | Canola | cytoskeleton, cytosol, nucleus | 31.0 | 33.53 |
| Bra031950.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 31.0 | 33.43 |
| Zm00001d024268_P001 | Maize | cytosol, nucleus, plastid | 25.34 | 33.33 |
| Zm00001d014405_P001 | Maize | nucleus | 27.22 | 33.11 |
| CDY42901 | Canola | nucleus | 30.46 | 32.85 |
| KRG94783 | Soybean | nucleus | 35.85 | 32.84 |
| Bra040153.1-P | Field mustard | nucleus | 30.19 | 32.65 |
| KRH06738 | Soybean | nucleus | 35.58 | 32.43 |
| Zm00001d041791_P001 | Maize | nucleus | 32.08 | 32.34 |
| Zm00001d020982_P001 | Maize | cytosol, mitochondrion, nucleus | 32.61 | 32.18 |
| Zm00001d003414_P002 | Maize | cytosol, mitochondrion, nucleus | 31.54 | 32.05 |
| KRH70130 | Soybean | nucleus | 35.31 | 31.95 |
| Zm00001d016950_P002 | Maize | nucleus | 32.34 | 31.91 |
| KRH08479 | Soybean | nucleus | 35.04 | 31.71 |
| VIT_08s0007g07640.t01 | Wine grape | nucleus | 34.23 | 31.51 |
| Zm00001d051140_P001 | Maize | cytosol, mitochondrion, nucleus | 24.53 | 30.95 |
| Zm00001d006053_P001 | Maize | nucleus | 32.34 | 30.93 |
| Zm00001d002285_P001 | Maize | cytosol, nucleus, plastid | 26.42 | 30.91 |
| Zm00001d025861_P001 | Maize | cytosol, nucleus, plastid | 24.26 | 30.72 |
| Zm00001d051956_P001 | Maize | cytosol, mitochondrion, nucleus | 24.53 | 30.54 |
| Zm00001d018435_P001 | Maize | cytosol, mitochondrion, nucleus | 24.26 | 30.41 |
| Zm00001d040189_P002 | Maize | mitochondrion, nucleus, peroxisome | 31.0 | 29.41 |
| Zm00001d003052_P001 | Maize | cytosol, mitochondrion, nucleus | 23.45 | 29.29 |
| Zm00001d041472_P001 | Maize | cytosol, nucleus, peroxisome | 26.15 | 28.61 |
| Zm00001d008403_P001 | Maize | plastid | 24.26 | 27.95 |
| GSMUA_Achr8P21470_001 | Banana | nucleus | 34.5 | 24.81 |
| Zm00001d031463_P002 | Maize | mitochondrion | 28.03 | 24.64 |
Protein Annotations
| EntrezGene:100382573 | MapMan:15.5.17 | Gene3D:3.30.310.150 | ProteinID:AQK57110.1 | EMBL:BT064790 | UniProt:C0P921 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EMBL:HQ858741 | InterPro:IPR003441 | InterPro:IPR036093 |
| InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 | PANTHER:PTHR31744:SF23 |
| SUPFAM:SSF101941 | UniParc:UPI000194B330 | EnsemblPlantsGene:Zm00001d052390 | EnsemblPlants:Zm00001d052390_P001 | EnsemblPlants:Zm00001d052390_T001 | SEG:seg |
Description
Arabidopsis NAC domain containing protein 87
Coordinates
chr4:+:188973669..188975433
Molecular Weight (calculated)
40679.4 Da
IEP (calculated)
8.347
GRAVY (calculated)
-0.732
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEPSVKSSE HGGGGIDLLF LPPGFRFHPT DEEVITSYLL QKLLNPSFAP HAIGEVDLNK CEPWDLPSKA KMGEEDSKEW YFFCRKGMKY PTGTRANRAT
101: KEGYWKATGK DREIFFKPAA GHDDVDRREQ LVGMKKTLVF YTGRAPRGTK TNWVMHEFRL IEGKGKYSRH RTTNDDLLLR FNPKDEWVVC KVHHKGGRHD
201: ASAAKKGGGG GGGEEQQYSS AAGTPNVSSV EAGGGGDDDE FLLDSVLLDY SSSCHFNSSG PTACTSSSRS RSMPPPRRHA PPADQQQAIM VGGSYYYTSL
301: HHHHQEMVAP TRFAAAAGLP SACASAAGAG AAQRSSQQHG VLQQQRLPAG NYNYYDDGGN YYAAGYRTSQ Y
101: KEGYWKATGK DREIFFKPAA GHDDVDRREQ LVGMKKTLVF YTGRAPRGTK TNWVMHEFRL IEGKGKYSRH RTTNDDLLLR FNPKDEWVVC KVHHKGGRHD
201: ASAAKKGGGG GGGEEQQYSS AAGTPNVSSV EAGGGGDDDE FLLDSVLLDY SSSCHFNSSG PTACTSSSRS RSMPPPRRHA PPADQQQAIM VGGSYYYTSL
301: HHHHQEMVAP TRFAAAAGLP SACASAAGAG AAQRSSQQHG VLQQQRLPAG NYNYYDDGGN YYAAGYRTSQ Y
001: MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY
101: WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS
201: SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA
301: TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS
101: WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS
201: SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA
301: TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS
Arabidopsis Description
anac046NAC domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQQ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.