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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, vacuole

Predictor Summary:
  • plastid 1
  • extracellular 2
  • mitochondrion 2
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 1
  • golgi 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, vacuole
Any Predictor:mitochondrion, plastid, secretory
iPSORT:plastid
MultiLoc:extracellular
Predotar:secretory
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:vacuole
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d003889_P001
Zm00001d005028_P001
Zm00001d008403_P001
Zm00001d010048_P004
Zm00001d014455_P001
Zm00001d014795_P001
Zm00001d015411_P001
Zm00001d016604_P001
Zm00001d017885_P001
Zm00001d022517_P001
Zm00001d025275_P001
Zm00001d028185_P002
Zm00001d028995_P001
Zm00001d029898_P001
Zm00001d030737_P001
Zm00001d031232_P009
Zm00001d036400_P001
Zm00001d040189_P002
Zm00001d042271_P001
Zm00001d045804_P003
Zm00001d047554_P001
Zm00001d048109_P002
Zm00001d050583_P001
Zm00001d051018_P002
Zm00001d051684_P007
Zm00001d052390_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G32230.1 Zm00001d051018_P002 AT1G06040.1 11018516
AT1G32230.1 Zm00001d051018_P002 AT1G06040.1 19548978
AT1G32230.1 Zm00001d031232_P009 AT2G01980.1 17023541
AT1G32230.1 Zm00001d014795_P001 AT2G16770.1 19548978
AT1G32230.1 Zm00001d036400_P001 AT2G16770.1 19548978
AT1G32230.1 Zm00001d003889_P001 AT2G33550.1 19548978
AT1G32230.1 Zm00001d016604_P001 AT2G33550.1 19548978
AT1G32230.1 Zm00001d025275_P001 AT2G33550.1 19548978
AT1G32230.1 Zm00001d042271_P001 AT2G33550.1 19548978
AT1G32230.1 Zm00001d050583_P001 AT2G33550.1 19548978
AT1G32230.1 Zm00001d030737_P001 AT2G37630.1 19548978
AT1G32230.1 Zm00001d005028_P001 AT3G04060.1 19548978
AT1G32230.1 Zm00001d008403_P001 AT3G04060.1 19548978
AT1G32230.1 Zm00001d022517_P001 AT3G04060.1 19548978
AT1G32230.1 Zm00001d028995_P001 AT3G04060.1 19548978
AT1G32230.1 Zm00001d040189_P002 AT3G04060.1 19548978
AT1G32230.1 Zm00001d047554_P001 AT3G04060.1 19548978
AT1G32230.1 Zm00001d052390_P001 AT3G04060.1 19548978
AT1G32230.1 Zm00001d005028_P001 AT3G04060.1 25348421
AT1G32230.1 Zm00001d008403_P001 AT3G04060.1 25348421
AT1G32230.1 Zm00001d022517_P001 AT3G04060.1 25348421
AT1G32230.1 Zm00001d028995_P001 AT3G04060.1 25348421
AT1G32230.1 Zm00001d040189_P002 AT3G04060.1 25348421
AT1G32230.1 Zm00001d047554_P001 AT3G04060.1 25348421
AT1G32230.1 Zm00001d052390_P001 AT3G04060.1 25348421
AT1G32230.1 Zm00001d010048_P004 AT3G11020.1 19548978
AT1G32230.1 Zm00001d029898_P001 AT4G00050.1 19548978
AT1G32230.1 Zm00001d010048_P004 AT5G05410.1 19548978
AT1G32230.1 Zm00001d017885_P001 AT5G48250.1 19548978
AT1G32230.1 Zm00001d045804_P003 AT5G48250.1 19548978
AT1G32230.1 Zm00001d051684_P007 AT5G48250.1 19548978
AT1G32230.1 Zm00001d014455_P001 AT5G61270.1 19548978
AT1G32230.1 Zm00001d015411_P001 AT5G61270.1 19548978
AT1G32230.1 Zm00001d028185_P002 AT5G61270.1 19548978
AT1G32230.1 Zm00001d048109_P002 AT5G61270.1 19548978
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER90487 Sorghum nucleus 68.75 78.71
HORVU5Hr1G124010.1 Barley nucleus 46.8 53.02
TraesCS4A01G321300.1 Wheat nucleus 45.27 52.2
TraesCS5B01G557500.2 Wheat nucleus 45.88 52.08
TraesCS5D01G551800.3 Wheat nucleus 45.27 51.38
Os03t0854800-03 Rice nucleus 44.97 50.51
HORVU0Hr1G014460.1 Barley nucleus 39.18 44.54
GSMUA_Achr11P... Banana nucleus 33.38 42.12
GSMUA_Achr8P14660_001 Banana cytosol, endoplasmic reticulum, nucleus 33.69 40.18
GSMUA_Achr5P14120_001 Banana nucleus 33.99 39.4
GSMUA_Achr4P19000_001 Banana nucleus 24.39 38.19
GSMUA_Achr2P18060_001 Banana nucleus 32.47 37.04
Zm00001d030110_P001 Maize mitochondrion, nucleus 33.38 36.74
Zm00001d014423_P002 Maize nucleus 33.84 36.22
CDY60257 Canola cytosol 16.62 33.33
VIT_02s0012g01920.t01 Wine grape cytosol 24.09 29.64
Solyc08g005270.2.1 Tomato nucleus 26.37 28.83
VIT_02s0012g01930.t01 Wine grape nucleus 26.22 27.61
PGSC0003DMT400038368 Potato nucleus 24.7 27.5
Bra023252.1-P Field mustard nucleus 19.97 27.18
Solyc08g076420.2.1 Tomato nucleus 24.54 26.97
Bra035511.1-P Field mustard cytosol 22.71 26.7
Bra005336.1-P Field mustard cytosol, nucleus, plastid 20.73 25.95
CDY22597 Canola nucleus 21.49 25.92
KRH74370 Soybean mitochondrion, nucleus, plastid 23.02 25.9
CDY32124 Canola nucleus 20.88 25.85
Bra017317.1-P Field mustard nucleus 20.88 25.85
CDY43007 Canola nucleus 22.87 25.82
AT1G32230.1 Thale cress nucleus 23.17 25.81
PGSC0003DMT400043197 Potato nucleus 23.32 25.76
CDY67026 Canola nucleus 21.49 25.64
Zm00001d028307_P001 Maize nucleus 16.62 25.29
Solyc06g066330.2.1 Tomato nucleus 22.87 25.25
KRH39574 Soybean mitochondrion, nucleus, plastid 22.41 25.21
CDX84199 Canola cytosol, nucleus, plastid 18.9 25.15
CDY31694 Canola nucleus 19.97 24.81
CDY41739 Canola cytosol 20.58 24.55
AT2G35510.3 Thale cress cytosol 21.04 24.3
Zm00001d047993_P001 Maize cytosol, nucleus, plastid 16.01 23.44
KRH74373 Soybean mitochondrion 14.02 19.29
Zm00001d052295_P024 Maize cytosol 19.36 13.48
Protein Annotations
EnsemblPlants:Zm00001d012821_P003EnsemblPlants:Zm00001d012821_T003EnsemblPlantsGene:Zm00001d012821EntrezGene:103625711Gene3D:3.90.228.10GO:GO:0003674
GO:GO:0003824GO:GO:0003950GO:GO:0016740InterPro:IPR012317InterPro:Poly(ADP-ribose)pol_cat_domInterPro:RST
PANTHER:PTHR32263PANTHER:PTHR32263:SF4PFAM:PF12174PFscan:PS51059ProteinID:AQK61508.1SEG:seg
SignalP:SignalP-noTMSUPFAM:SSF56399UniParc:UPI0008445397UniProt:A0A1D6GCZ4MapMan:35.1:
Description
Probable inactive poly [ADP-ribose] polymerase SRO1
Coordinates
chr5:+:898977..903918
Molecular Weight (calculated)
73272.8 Da
IEP (calculated)
7.241
GRAVY (calculated)
-0.321
Length
656 amino acids
Sequence
(BLAST)
001: MVFCCLPVWL WQPSALPGAA VSRDGVKHTQ FYSAQVSIKE MEQRNVLALG EHVLKATVWK RKHKTAMEHP EGNDVMVFSQ HDQRKHPVIF DDRAKCKKSK
101: LISCGSGVIL ESYWNFKTSG LPVRVLFYQH GDWSDFPEDV VNLAQQDFQL KKPITTAVFQ NKHILLDFIH MICIDYEMTI DKPLAWVDDN GKRFFPDLSA
201: GLYTSKPSQH ENGEADECDG TPTSVAESSS SVSVGEVVSH GKRINDIAED NMRAHNILYE AVGENISGPS FHLNEYSSGT IQATGKPNDC RRIDSAVRNL
301: LLKGLGQPFS EEDIIGIYRT PLLDQRGQVR CGLFQKEIEE TRSRRGNANV RYAWLPCSRY TMEQMAMRGA LEIAKPHKGS ICGVGTCLAP ANCTNSCARY
401: SDFHEDGIIR MMLCRVIMGN VEVVLPGSKQ FQPSNGSFDN GVDDLQNPQN YIVWDANVHK HIYAEYAVIV QAPLVTNECS GLKDSVPNIS EIISSGSRDN
501: LTKVYLLGLM RTIGMMDPLF LVCFDQEDRF APCGVEQEAP RLGRAPRAPS SPWMPFSMLF AAISTKVPRS DMELVIRYYE EFKRKRMSRS DLVVRMRQIV
601: GDKILVSTIM RLHHQKKKEA NRGGDDGFLQ PPSMAAAAAG LARALARGEE GGGVAE
Best Arabidopsis Sequence Match ( AT1G32230.1 )
(BLAST)
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.