Factsheet for Zm00001d051018_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012821_P003
Zm00001d014423_P002
Zm00001d018207_P001
Zm00001d030110_P001
Zm00001d052138_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06040.1	Zm00001d012821_P003	AT1G32230.1	11018516
AT1G06040.1	Zm00001d014423_P002	AT1G32230.1	11018516
AT1G06040.1	Zm00001d030110_P001	AT1G32230.1	11018516
AT1G06040.1	Zm00001d012821_P003	AT1G32230.1	19548978
AT1G06040.1	Zm00001d014423_P002	AT1G32230.1	19548978
AT1G06040.1	Zm00001d030110_P001	AT1G32230.1	19548978
AT1G06040.1	Zm00001d018207_P001	AT2G32950.1	11226162
AT1G06040.1	Zm00001d052138_P004	AT2G32950.1	11226162
AT2G31380.1	Zm00001d018207_P001	AT2G32950.1	11226162
AT2G31380.1	Zm00001d052138_P004	AT2G32950.1	11226162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07119	Sorghum	nucleus	91.7	88.21
TraesCS6A01G216400.1	Wheat	extracellular	77.47	76.56
TraesCS6D01G199200.1	Wheat	extracellular	76.28	74.23
TraesCS6B01G246500.1	Wheat	extracellular	75.49	73.46
GSMUA_Achr9P02360_001	Banana	cytosol	55.34	58.82
VIT_05s0102g00750.t01	Wine grape	nucleus	54.94	58.16
KRH23214	Soybean	nucleus	54.15	57.32
Solyc06g073180.2.1	Tomato	nucleus	51.78	56.22
KRH29616	Soybean	nucleus	52.57	55.88
KRH24617	Soybean	nucleus	52.57	55.88
PGSC0003DMT400069498	Potato	nucleus	51.38	55.79
CDY15558	Canola	nucleus	52.57	55.42
Bra030635.1-P	Field mustard	nucleus	52.57	55.19
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	55.34	55.12
CDX86539	Canola	nucleus	52.17	54.77
Bra015469.1-P	Field mustard	nucleus	52.17	54.32
CDY06194	Canola	nucleus	50.2	54.27
Bra032441.1-P	Field mustard	nucleus	49.8	53.85
CDY09992	Canola	nucleus	49.8	53.62
AT2G31380.1	Thale cress	nucleus	49.41	52.52
AT1G06040.1	Thale cress	nucleus	51.38	52.42
CDY19093	Canola	nucleus	49.01	51.88
Bra021734.1-P	Field mustard	nucleus	49.01	51.67
CDY15382	Canola	nucleus	49.01	51.24
CDY56613	Canola	nucleus	48.62	50.62
Bra018249.1-P	Field mustard	nucleus	48.22	50.21
CDY10800	Canola	nucleus	47.83	49.79
Zm00001d017412_P001	Maize	nucleus	23.32	41.55
KRH10122	Soybean	nucleus	53.36	34.44
Zm00001d025957_P001	Maize	nucleus	28.06	27.73
Zm00001d002806_P001	Maize	nucleus	28.06	27.52
Zm00001d021278_P001	Maize	cytosol	22.13	27.18
Zm00001d037735_P001	Maize	cytosol	32.81	25.78
Zm00001d051309_P001	Maize	nucleus	28.06	25.63
Zm00001d039437_P001	Maize	nucleus	35.97	25.35
Zm00001d036418_P001	Maize	nucleus	26.09	24.54
Zm00001d036214_P001	Maize	nucleus	33.2	21.76
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	29.25	20.85
Zm00001d045323_P004	Maize	nucleus	33.99	20.38
Zm00001d006198_P001	Maize	cytosol	18.58	18.5
Zm00001d010093_P001	Maize	nucleus	7.91	10.05

Protein Annotations

EntrezGene:100273793	MapMan:15.5.1.1	Gene3D:3.30.40.200	ProteinID:AQK53466.1	UniProt:B4FXI0	EMBL:BT041818
EMBL:EU956191	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008270	InterPro:IPR000315	EMBL:KJ727923	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832
PANTHER:PTHR31832:SF30	SMART:SM00336	UniParc:UPI00017B7C10	EnsemblPlantsGene:Zm00001d051018	EnsemblPlants:Zm00001d051018_P002	EnsemblPlants:Zm00001d051018_T002
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

double B-box zinc finger protein4B-box zinc finger protein 24

Coordinates

chr4:-:137141478..137142700

Molecular Weight (calculated)

27235.7 Da

IEP (calculated)

4.737

GRAVY (calculated)

-0.318

Length

253 amino acids

Sequence
(BLAST)

001: MKIQCDACEG AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLEAL SASLPRCDVC QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT
101: DIRVGFASAS SACSDACDAH DDSDHHAPPK AAVSSAAQQV PSPPQFLPQG WAVDELLQFS DCESSDKLHK ESPLGFKELE WFTDIDLFHE QTPKAGRRLA
201: EVPELSGTQA ANDAAYYRPA KATATAGAGV RQSKKARTEV TDDEDHLIVP DLG

Best Arabidopsis Sequence Match ( AT1G06040.1 )
(BLAST)

001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG

Arabidopsis Description

BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.