Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G31380.1 | CDY12145 | AT2G32950.1 | 11226162 |
| AT2G31380.1 | CDY52540 | AT2G32950.1 | 11226162 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018249.1-P | Field mustard | nucleus | 96.71 | 96.71 |
| CDY56613 | Canola | nucleus | 96.3 | 96.3 |
| CDY19093 | Canola | nucleus | 89.3 | 90.8 |
| CDY15382 | Canola | nucleus | 89.3 | 89.67 |
| AT2G31380.1 | Thale cress | nucleus | 86.83 | 88.66 |
| CDX86539 | Canola | nucleus | 72.84 | 73.44 |
| CDY15558 | Canola | nucleus | 72.43 | 73.33 |
| CDY06194 | Canola | nucleus | 67.49 | 70.09 |
| CDY09992 | Canola | nucleus | 67.49 | 69.79 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 61.32 | 62.34 |
| Solyc06g073180.2.1 | Tomato | nucleus | 57.61 | 60.09 |
| PGSC0003DMT400069498 | Potato | nucleus | 57.2 | 59.66 |
| KRH23214 | Soybean | nucleus | 58.02 | 59.0 |
| KRH29616 | Soybean | nucleus | 56.79 | 57.98 |
| KRH24617 | Soybean | nucleus | 56.79 | 57.98 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 53.5 | 54.62 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 55.14 | 52.76 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 51.85 | 49.22 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 51.85 | 48.46 |
| Zm00001d051018_P002 | Maize | extracellular | 49.79 | 47.83 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 51.03 | 47.69 |
| EES07119 | Sorghum | nucleus | 50.21 | 46.39 |
| Os02t0606200-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 49.38 | 44.28 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 46.09 | 44.09 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 46.09 | 43.41 |
| EES12431 | Sorghum | nucleus | 47.74 | 43.28 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 45.68 | 43.02 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 45.68 | 42.21 |
| CDX86867 | Canola | nucleus | 26.34 | 40.25 |
| CDX99534 | Canola | nucleus | 25.93 | 39.62 |
| KRH10122 | Soybean | nucleus | 57.61 | 35.71 |
| Os04t0493000-01 | Rice | cytosol | 26.34 | 34.78 |
| CDX82018 | Canola | cytosol | 24.69 | 32.09 |
| CDX72726 | Canola | cytosol | 23.05 | 31.28 |
| CDX90301 | Canola | cytosol | 23.05 | 31.11 |
| CDY12111 | Canola | cytosol | 22.63 | 30.56 |
| CDX79268 | Canola | nucleus | 34.98 | 29.51 |
| CDY11657 | Canola | nucleus | 35.39 | 29.15 |
| CDX88458 | Canola | nucleus | 35.39 | 29.15 |
| CDX87448 | Canola | nucleus | 34.98 | 29.11 |
| CDY41957 | Canola | nucleus | 25.1 | 28.77 |
| CDY69214 | Canola | nucleus | 33.74 | 28.47 |
| CDY14607 | Canola | nucleus | 33.33 | 27.84 |
| CDY26870 | Canola | nucleus | 34.16 | 27.67 |
| CDY42602 | Canola | nucleus | 24.69 | 25.64 |
| CDY12117 | Canola | nucleus | 25.1 | 25.21 |
| CDX90306 | Canola | nucleus | 24.69 | 24.9 |
| CDY22402 | Canola | plastid | 16.46 | 24.84 |
| CDY39040 | Canola | nucleus | 30.04 | 24.83 |
| CDY13564 | Canola | nucleus | 29.63 | 23.76 |
| CDX73178 | Canola | nucleus | 30.45 | 22.98 |
| CDX85903 | Canola | nucleus | 30.04 | 22.88 |
| CDX68124 | Canola | nucleus | 30.04 | 22.88 |
| CDY47514 | Canola | nucleus | 30.04 | 22.74 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | GO:A0A078F8L1 | UniProt:A0A078F8L1 | EnsemblPlants:CDY10800 | ProteinID:CDY10800 |
| ProteinID:CDY10800.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008270 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00048645001 | InterPro:IPR000315 | PFAM:PF00643 | PFscan:PS50119 |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF8 | SMART:SM00336 | UniParc:UPI0004EE6136 | InterPro:Znf_B-box | SEG:seg |
Description
BnaA05g11360DBnaA05g11360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8L1]
Coordinates
chrLK032006:+:815989..817254
Molecular Weight (calculated)
27262.2 Da
IEP (calculated)
5.347
GRAVY (calculated)
-0.484
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCEK APATLICCAD EAALCAKCDI EVHAANKLAS KHQRLFLDSL STKFPPCDIC LEKAAFIFCV EDRALLCRDC DEGTHAPNTR SANHQRFLAT
101: GIRVALSSAS CSKEVKMNHF DPPNQQTLSK PPTQQPVVPS PPWTGDEFFR YSDLECSNKK EQLDLGELDW LAEMGFFGDQ PDQEALPAAE VPELSVSHLA
201: HVHSYNRPMN SNVSNKKPRL EIRYDNDEEH FLVPDLGLNY KRN
101: GIRVALSSAS CSKEVKMNHF DPPNQQTLSK PPTQQPVVPS PPWTGDEFFR YSDLECSNKK EQLDLGELDW LAEMGFFGDQ PDQEALPAAE VPELSVSHLA
201: HVHSYNRPMN SNVSNKKPRL EIRYDNDEEH FLVPDLGLNY KRN
001: MKIQCDVCEK APATLICCAD EAALCAKCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
Arabidopsis Description
BBX25B-box zinc finger protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9SID1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.