Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75540.1 | CDY12145 | AT2G32950.1 | 17965270 |
| AT1G75540.1 | CDY52540 | AT2G32950.1 | 17965270 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68124 | Canola | nucleus | 98.12 | 98.12 |
| CDY13564 | Canola | nucleus | 81.82 | 86.14 |
| CDY47514 | Canola | nucleus | 85.27 | 84.74 |
| CDX73178 | Canola | nucleus | 84.95 | 84.16 |
| CDY39040 | Canola | nucleus | 75.86 | 82.31 |
| AT1G75540.1 | Thale cress | nucleus | 84.64 | 81.57 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 51.1 | 53.8 |
| KRH17384 | Soybean | nucleus | 46.4 | 53.62 |
| PGSC0003DMT400009514 | Potato | nucleus | 46.71 | 50.0 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 31.66 | 49.75 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 28.84 | 49.46 |
| Zm00001d017412_P001 | Maize | nucleus | 21.94 | 49.3 |
| Solyc04g081020.2.1 | Tomato | nucleus | 46.08 | 49.16 |
| KRH51757 | Soybean | nucleus | 37.62 | 48.98 |
| CDY41957 | Canola | nucleus | 31.97 | 48.11 |
| GSMUA_Achr11P... | Banana | cytosol | 29.78 | 47.98 |
| GSMUA_Achr11P... | Banana | nucleus | 27.27 | 47.03 |
| CDY12117 | Canola | nucleus | 35.42 | 46.69 |
| CDX90306 | Canola | nucleus | 34.8 | 46.06 |
| KRH61078 | Soybean | nucleus | 38.24 | 45.86 |
| CDY42602 | Canola | nucleus | 33.23 | 45.3 |
| KRH05902 | Soybean | nucleus | 46.4 | 45.26 |
| Solyc12g089240.1.1 | Tomato | nucleus | 46.4 | 44.98 |
| PGSC0003DMT400075652 | Potato | nucleus | 46.4 | 44.85 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 31.35 | 42.37 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 31.35 | 42.02 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.36 | 41.73 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 31.03 | 41.6 |
| GSMUA_Achr11P... | Banana | nucleus | 33.54 | 40.84 |
| Os04t0540200-01 | Rice | nucleus | 31.03 | 39.6 |
| CDX99534 | Canola | nucleus | 19.44 | 38.99 |
| CDX86867 | Canola | nucleus | 19.44 | 38.99 |
| Os02t0646200-01 | Rice | nucleus | 32.6 | 38.66 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 31.03 | 38.37 |
| Zm00001d025957_P001 | Maize | nucleus | 30.72 | 38.28 |
| Zm00001d051309_P001 | Maize | nucleus | 32.92 | 37.91 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 31.03 | 37.79 |
| Zm00001d002806_P001 | Maize | nucleus | 30.41 | 37.6 |
| OQU82040 | Sorghum | nucleus | 31.03 | 37.36 |
| EES07539 | Sorghum | nucleus | 33.54 | 36.27 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 30.09 | 36.23 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 30.41 | 35.27 |
| CDY06194 | Canola | nucleus | 25.39 | 34.62 |
| CDX86539 | Canola | nucleus | 26.02 | 34.44 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 30.72 | 34.39 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 30.41 | 34.04 |
| CDY15558 | Canola | nucleus | 25.39 | 33.75 |
| CDY09992 | Canola | nucleus | 24.76 | 33.62 |
| Os06t0713000-01 | Rice | nucleus | 31.66 | 32.79 |
| Zm00001d036418_P001 | Maize | nucleus | 27.27 | 32.34 |
| CDY19093 | Canola | nucleus | 24.14 | 32.22 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 31.03 | 31.83 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 31.03 | 31.63 |
| CDY15382 | Canola | nucleus | 23.51 | 30.99 |
| CDY12111 | Canola | cytosol | 17.24 | 30.56 |
| CDX90301 | Canola | cytosol | 17.24 | 30.56 |
| CDX82018 | Canola | cytosol | 17.87 | 30.48 |
| CDY56613 | Canola | nucleus | 23.2 | 30.45 |
| EER90373 | Sorghum | cytosol | 28.84 | 30.16 |
| CDY10800 | Canola | nucleus | 22.88 | 30.04 |
| CDX79268 | Canola | nucleus | 26.96 | 29.86 |
| CDX87448 | Canola | nucleus | 27.27 | 29.79 |
| CDX72726 | Canola | cytosol | 16.61 | 29.61 |
| CDY14607 | Canola | nucleus | 26.96 | 29.55 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 36.05 | 29.34 |
| CDY69214 | Canola | nucleus | 26.33 | 29.17 |
| CDY26870 | Canola | nucleus | 27.27 | 29.0 |
| CDY11657 | Canola | nucleus | 26.65 | 28.81 |
| CDX88458 | Canola | nucleus | 26.65 | 28.81 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 32.92 | 27.42 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.78 | 26.76 |
| CDY22402 | Canola | plastid | 12.23 | 24.22 |
Protein Annotations
| EnsemblPlants:CDX85903 | EnsemblPlantsGene:GSBRNA2T00143727001 | Gene3D:3.30.40.200 | GO:A0A078DF26 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF6 | PFAM:PF00643 | PFscan:PS50119 | ProteinID:CDX85903 | ProteinID:CDX85903.1 |
| SEG:seg | SMART:SM00336 | SUPFAM:SSF57845 | UniParc:UPI0004EE9BBA | MapMan:15.5.1.1 | : |
Description
BnaC06g22310D
Coordinates
chrLK031843:+:735345..736970
Molecular Weight (calculated)
35411.0 Da
IEP (calculated)
6.721
GRAVY (calculated)
-0.744
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNNSSPIC DICQEKKALL FCQQDRAILC KDCDTSIHSA NEHKKKHDRF
101: LLTGVKLSAT SSVYKPTSES SSSSSQDCSV PSKKPLSAPQ SNTSKILPSS KIGGDSEVSQ WGSTSTISEY LIDTLPGWHV EDFLDSSLPP FGFSKSGHDD
201: GVLPYIEAED DSTKRNNYNT ASLPSENLGI WVPQIPQTLP SSNTNQYFSQ ENNNNNIQFG MYNNKEKSPE EKTYAPIQNM KQQGQNKRWY DDGGFTVPQI
301: TTTLSHPPLH SNKKSRAFW
101: LLTGVKLSAT SSVYKPTSES SSSSSQDCSV PSKKPLSAPQ SNTSKILPSS KIGGDSEVSQ WGSTSTISEY LIDTLPGWHV EDFLDSSLPP FGFSKSGHDD
201: GVLPYIEAED DSTKRNNYNT ASLPSENLGI WVPQIPQTLP SSNTNQYFSQ ENNNNNIQFG MYNNKEKSPE EKTYAPIQNM KQQGQNKRWY DDGGFTVPQI
301: TTTLSHPPLH SNKKSRAFW
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
Arabidopsis Description
BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.