Factsheet for Solyc12g089240.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g005950.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75540.1	Solyc12g005950.1.1	AT2G32950.1	17965270

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075652	Potato	nucleus	93.62	93.33
Solyc04g081020.2.1	Tomato	nucleus	55.62	61.2
VIT_18s0001g13520.t01	Wine grape	nucleus	51.98	56.44
KRH17384	Soybean	nucleus	45.59	54.35
KRH51757	Soybean	nucleus	40.43	54.29
KRH61078	Soybean	nucleus	41.34	51.13
GSMUA_Achr11P...	Banana	nucleus	28.27	50.27
Solyc01g110180.2.1	Tomato	nucleus	31.0	50.25
Bra008204.1-P	Field mustard	nucleus	44.98	49.01
Zm00001d017412_P001	Maize	nucleus	20.97	48.59
GSMUA_Achr9P20930_001	Banana	cytosol	27.36	48.39
GSMUA_Achr11P...	Banana	cytosol	28.57	47.47
GSMUA_Achr4P05180_001	Banana	cytosol	29.18	47.29
CDY39040	Canola	nucleus	42.25	47.28
CDY13564	Canola	nucleus	43.16	46.86
KRH05902	Soybean	nucleus	46.2	46.48
CDX85903	Canola	nucleus	44.98	46.4
Bra015835.1-P	Field mustard	nucleus	44.98	46.11
CDY47514	Canola	nucleus	44.98	46.11
CDX68124	Canola	nucleus	44.68	46.08
Bra003748.1-P	Field mustard	nucleus	44.68	46.08
CDX73178	Canola	nucleus	44.68	45.65
Solyc02g084420.2.1	Tomato	cytosol	12.16	45.45
TraesCS6A01G239300.1	Wheat	nucleus	31.61	44.07
TraesCS6D01G221700.1	Wheat	nucleus	31.61	43.7
TraesCS6B01G285200.1	Wheat	nucleus	31.61	43.7
AT1G75540.1	Thale cress	nucleus	43.47	43.2
Zm00001d025957_P001	Maize	nucleus	32.22	41.41
Os02t0646200-01	Rice	nucleus	33.74	41.26
Os04t0540200-01	Rice	nucleus	31.31	41.2
OQU82040	Sorghum	nucleus	32.52	40.38
Zm00001d002806_P001	Maize	nucleus	31.61	40.31
GSMUA_AchrUn_...	Banana	nucleus	33.74	39.93
TraesCS2D01G386300.1	Wheat	nucleus	31.61	39.69
TraesCS2A01G388500.1	Wheat	nucleus	31.0	39.53
TraesCS2B01G406600.2	Wheat	nucleus	31.61	39.25
GSMUA_Achr11P...	Banana	nucleus	31.0	38.93
Zm00001d051309_P001	Maize	nucleus	30.7	36.46
HORVU7Hr1G091180.1	Barley	nucleus	30.09	36.0
EES07539	Sorghum	nucleus	32.22	35.93
TraesCS7D01G379900.1	Wheat	nucleus	31.0	35.79
HORVU2Hr1G092460.9	Barley	cytosol, mitochondrion, nucleus	30.4	35.09
Zm00001d036418_P001	Maize	nucleus	28.57	34.94
Solyc06g073180.2.1	Tomato	nucleus	24.01	33.91
TraesCS7B01G286300.1	Wheat	nucleus	31.61	33.44
TraesCS7A01G383400.3	Wheat	nucleus	31.31	32.91
Os06t0713000-01	Rice	nucleus	30.7	32.79
EER90373	Sorghum	cytosol	29.79	32.13
Solyc07g062160.2.1	Tomato	nucleus	27.66	30.54
Solyc12g005420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	26.14	30.5
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	31.0	28.73
GSMUA_Achr1P07740_001	Banana	nucleus	33.74	28.32
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	31.31	26.89
Solyc01g110370.2.1	Tomato	cytosol	16.11	21.99

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009791	GO:GO:0009987	InterPro:IPR000315	UniProt:K4DGZ5	PFAM:PF00643	PFscan:PS50119
PANTHER:PTHR31832	PANTHER:PTHR31832:SF6	SMART:SM00336	EnsemblPlantsGene:Solyc12g089240.1	EnsemblPlants:Solyc12g089240.1.1	UniParc:UPI0002769735
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:64351468..64353740

Molecular Weight (calculated)

36393.8 Da

IEP (calculated)

7.369

GRAVY (calculated)

-0.491

Length

329 amino acids

Sequence
(BLAST)

001: MKIQCDVCNK KEAIVFCTAD EAALCDDCDH RVHHVNKLAS KHQRFSLVQP SPKQAPMCDI CQERRGFLFC QQDRAIMCRE CDIPIHKANE HTQKHNRYLL
101: TGIKLSANSA LYSAPSQSQS QSQSAISSAD SCVSNLKSKD STSKPVAGSV FVSPAIISNS TKGGAVSSAV ESVKVVKEKV GGCNNNVQFV NGGGNNLTSS
201: ISEYLEMLPG WHVEDFLDCS TPNVYSKNIG DEDMLSFWDT DLESQFSSFP PQNVGIWVPQ APPLQESKQE TQIQFFPSQN LNFGGQIGLK ESREVTNIKS
301: SRKWTDDNSF AVPQMKPPST SFKRTRTLW

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.