Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- cytosol 1
- plastid 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d018207_P001 | |
| Zm00001d052138_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75540.1 | Zm00001d018207_P001 | AT2G32950.1 | 17965270 |
| AT1G75540.1 | Zm00001d052138_P004 | AT2G32950.1 | 17965270 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G221700.1 | Wheat | nucleus | 69.72 | 41.6 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 69.01 | 41.53 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 68.31 | 40.76 |
| Zm00001d051309_P001 | Maize | nucleus | 76.06 | 38.99 |
| Os02t0646200-01 | Rice | nucleus | 71.83 | 37.92 |
| Zm00001d002806_P001 | Maize | nucleus | 68.31 | 37.6 |
| Zm00001d025957_P001 | Maize | nucleus | 66.2 | 36.72 |
| Solyc01g110180.2.1 | Tomato | nucleus | 49.3 | 34.48 |
| CDY41957 | Canola | nucleus | 49.3 | 33.02 |
| CDY42602 | Canola | nucleus | 51.41 | 31.2 |
| Bra011879.1-P | Field mustard | nucleus | 52.11 | 30.96 |
| CDY12117 | Canola | nucleus | 52.11 | 30.58 |
| KRH51476 | Soybean | nucleus | 50.0 | 30.47 |
| CDX90306 | Canola | nucleus | 51.41 | 30.29 |
| Bra010713.1-P | Field mustard | nucleus | 51.41 | 30.29 |
| AT4G39070.1 | Thale cress | cytosol | 51.41 | 30.17 |
| KRH51757 | Soybean | nucleus | 50.0 | 28.98 |
| PGSC0003DMT400079507 | Potato | nucleus | 49.3 | 27.78 |
| KRH61078 | Soybean | nucleus | 50.0 | 26.69 |
| KRH17384 | Soybean | nucleus | 50.7 | 26.09 |
| Zm00001d036418_P001 | Maize | nucleus | 47.18 | 24.91 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 52.11 | 24.42 |
| VIT_03s0038g00340.t01 | Wine grape | nucleus | 50.7 | 23.84 |
| Bra008204.1-P | Field mustard | nucleus | 50.7 | 23.84 |
| CDY39040 | Canola | nucleus | 49.3 | 23.81 |
| CDY13564 | Canola | nucleus | 50.7 | 23.76 |
| PGSC0003DMT400009514 | Potato | nucleus | 49.3 | 23.49 |
| Solyc04g081020.2.1 | Tomato | nucleus | 49.3 | 23.41 |
| Zm00001d051018_P002 | Maize | extracellular | 41.55 | 23.32 |
| KRH29378 | Soybean | nucleus | 46.48 | 22.92 |
| Bra015835.1-P | Field mustard | nucleus | 51.41 | 22.74 |
| CDY47514 | Canola | nucleus | 51.41 | 22.74 |
| KRH05902 | Soybean | nucleus | 52.11 | 22.63 |
| CDX73178 | Canola | nucleus | 50.7 | 22.36 |
| CDX68124 | Canola | nucleus | 49.3 | 21.94 |
| Bra003748.1-P | Field mustard | nucleus | 49.3 | 21.94 |
| CDX85903 | Canola | nucleus | 49.3 | 21.94 |
| Zm00001d021278_P001 | Maize | cytosol | 31.69 | 21.84 |
| KRH60788 | Soybean | nucleus | 48.59 | 21.63 |
| AT1G75540.1 | Thale cress | nucleus | 50.0 | 21.45 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 53.52 | 21.41 |
| Zm00001d037735_P001 | Maize | cytosol | 47.89 | 21.12 |
| Solyc12g089240.1.1 | Tomato | nucleus | 48.59 | 20.97 |
| PGSC0003DMT400075652 | Potato | nucleus | 48.59 | 20.91 |
| KRH24393 | Soybean | nucleus | 29.58 | 20.49 |
| Zm00001d039437_P001 | Maize | nucleus | 47.18 | 18.66 |
| Zm00001d036214_P001 | Maize | nucleus | 47.18 | 17.36 |
| Zm00001d045323_P004 | Maize | nucleus | 47.89 | 16.11 |
| Zm00001d006198_P001 | Maize | cytosol | 25.35 | 14.17 |
| Zm00001d010093_P001 | Maize | nucleus | 2.11 | 1.51 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | UniProt:A0A060D895 | ProteinID:AQK73124.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR000315 |
| EMBL:KJ728397 | PFAM:PF00643 | PFscan:PS50119 | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF28 | SMART:SM00336 |
| UniParc:UPI00049B3E05 | EnsemblPlantsGene:Zm00001d017412 | EnsemblPlants:Zm00001d017412_P001 | EnsemblPlants:Zm00001d017412_T001 | InterPro:Znf_B-box | SEG:seg |
Description
double B-box zinc finger protein7B-box zinc finger protein 20
Coordinates
chr5:+:195189894..195191367
Molecular Weight (calculated)
15395.6 Da
IEP (calculated)
9.178
GRAVY (calculated)
-0.343
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVQCDVCAA EAASVFCCAD EAALCEACDR RVHRANKLAG KHRRLSLLSP AAPSSSAQQT PPPPLCDICQ EKRGLLFCKE DRAILCPDCD VPVHTASELA
101: MRHTRFLLTG VRLSGSPQSP PRARRRRRRT RTTAAAAASP ST
101: MRHTRFLLTG VRLSGSPQSP PRARRRRRRT RTTAAAAASP ST
001: MKIWCAVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
Arabidopsis Description
BBX20B-box zinc finger protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q0IGM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.