Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018207_P001 | Maize | nucleus | 96.06 | 95.09 |
| KXG31183 | Sorghum | nucleus, plastid | 96.06 | 94.82 |
| Os02t0771100-01 | Rice | nucleus | 89.65 | 89.78 |
| Zm00001d011892_P001 | Maize | cytosol | 15.6 | 85.6 |
| TraesCS6B01G356400.1 | Wheat | nucleus | 85.57 | 84.7 |
| TraesCS6D01G305800.1 | Wheat | nucleus | 86.15 | 84.55 |
| TraesCS6A01G326100.1 | Wheat | nucleus | 85.42 | 83.71 |
| VIT_10s0523g00030.t01 | Wine grape | nucleus | 69.53 | 79.24 |
| GSMUA_Achr3P20130_001 | Banana | nucleus | 76.82 | 77.96 |
| Bra021818.1-P | Field mustard | cytosol | 12.97 | 74.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 68.66 | 73.71 |
| CDY19171 | Canola | cytosol | 26.97 | 73.41 |
| Solyc12g005950.1.1 | Tomato | nucleus | 71.14 | 72.08 |
| PGSC0003DMT400036075 | Potato | nucleus | 67.64 | 71.06 |
| AT2G32950.1 | Thale cress | nucleus | 69.83 | 70.96 |
| KRH14801 | Soybean | nucleus | 69.53 | 70.67 |
| KRH73341 | Soybean | nucleus | 68.8 | 70.55 |
| CDY12145 | Canola | nucleus | 69.24 | 70.27 |
| CDY52540 | Canola | nucleus | 69.24 | 70.16 |
| Bra005541.1-P | Field mustard | nucleus | 68.22 | 69.96 |
| VIT_12s0059g01420.t01 | Wine grape | nucleus | 68.51 | 69.53 |
| Solyc11g011980.1.1 | Tomato | nucleus | 67.49 | 68.9 |
| PGSC0003DMT400034706 | Potato | nucleus | 67.49 | 67.2 |
| CDX79494 | Canola | cytosol | 9.04 | 60.19 |
| Zm00001d016202_P001 | Maize | cytosol | 10.93 | 58.14 |
| Zm00001d043592_P004 | Maize | cytosol | 32.22 | 27.94 |
| Zm00001d011746_P002 | Maize | nucleus | 31.92 | 27.41 |
| Zm00001d014990_P001 | Maize | cytosol | 12.97 | 21.39 |
| Zm00001d039072_P005 | Maize | cytosol | 30.61 | 18.72 |
| Zm00001d009617_P017 | Maize | mitochondrion | 30.9 | 18.5 |
Protein Annotations
| EntrezGene:100279342 | MapMan:18.4.16 | MapMan:19.2.2.8.3.4.1 | Gene3D:2.130.10.10 | MapMan:26.1.1.3.3.1 | Gene3D:3.30.40.10 |
| UniProt:A0A1D6QDP5 | ProteinID:AQK56295.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0016874 | InterPro:IPR001680 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF13923 | ScanProsite:PS00518 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50089 | PFscan:PS50294 | PANTHER:PTHR44080 | PANTHER:PTHR44080:SF2 | SMART:SM00184 | SMART:SM00320 |
| SUPFAM:SSF50978 | SUPFAM:SSF57850 | UniParc:UPI0004DE7CF0 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d052138 | EnsemblPlants:Zm00001d052138_P004 | EnsemblPlants:Zm00001d052138_T004 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : | : |
Description
E3 ubiquitin-protein ligase COP1
Coordinates
chr4:+:180623149..180630064
Molecular Weight (calculated)
76703.9 Da
IEP (calculated)
7.497
GRAVY (calculated)
-0.448
Length
686 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSSVAGAL VPSVPKPETA PSGDNSTAAL ALPEEAGTRA ASASPQGPAE EEGPADRDLL CPICMAVIKD AFLTACGHSF CYMCVVTHLS NKSDCPCCGH
101: YLTKAQLYPN FLLDKVLKKI SARQIAKTAS PVDQFRCALQ QGNEMGVKEL DSLMTLIAEK KRQMEQQESE TNMQILLVFL HCLRKQKLEE LNEIQSDLQY
201: IKEDISAVER HRVELYRTKE RYSMKLRMLL DEPTAQKMWP SPMDKASCRF PPNSRTPLGG SCPGTLQNKK LDPKAQVSHQ GFQRRDALTS SDPPNSSIQS
301: GNVIARKRRV QAQFNELQEY YLQRRRTGAQ ARRQEERETV AMNREGYHAG LQDFQSVLTT FTRYSRLRVI AELRHGDLFH SANIVSSIEF DRDDELFATA
401: GVSKRIKVFE FSTVVNEPSD VHCPVVEMAT RSKLSCLSWN KYSKNIIASS DYEGIVTVWD VQTRQSVMEY EEHEKRAWSV DFSRTEPSML VSGSDDCKVK
501: VWCTKQEASV INIDMKANIC SVKYNPGSSF YVAVGSADHH IHYFDLRNPS APVHVFGGHK KAVSYVKFLS NNELASASTD STLRLWDVKD NLPVRTFRGH
601: KNEKNFVGLS VNNEYIACGS ETNEVFVYHK AISKPAASHR FVSSNLDDAD DDPGSYFISA VCWKSDSPTM LAANSQGTIK VHVLAP
101: YLTKAQLYPN FLLDKVLKKI SARQIAKTAS PVDQFRCALQ QGNEMGVKEL DSLMTLIAEK KRQMEQQESE TNMQILLVFL HCLRKQKLEE LNEIQSDLQY
201: IKEDISAVER HRVELYRTKE RYSMKLRMLL DEPTAQKMWP SPMDKASCRF PPNSRTPLGG SCPGTLQNKK LDPKAQVSHQ GFQRRDALTS SDPPNSSIQS
301: GNVIARKRRV QAQFNELQEY YLQRRRTGAQ ARRQEERETV AMNREGYHAG LQDFQSVLTT FTRYSRLRVI AELRHGDLFH SANIVSSIEF DRDDELFATA
401: GVSKRIKVFE FSTVVNEPSD VHCPVVEMAT RSKLSCLSWN KYSKNIIASS DYEGIVTVWD VQTRQSVMEY EEHEKRAWSV DFSRTEPSML VSGSDDCKVK
501: VWCTKQEASV INIDMKANIC SVKYNPGSSF YVAVGSADHH IHYFDLRNPS APVHVFGGHK KAVSYVKFLS NNELASASTD STLRLWDVKD NLPVRTFRGH
601: KNEKNFVGLS VNNEYIACGS ETNEVFVYHK AISKPAASHR FVSSNLDDAD DDPGSYFISA VCWKSDSPTM LAANSQGTIK VHVLAP
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.