Factsheet for Zm00001d045735_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018207_P001
Zm00001d052138_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24790.1	Zm00001d018207_P001	AT2G32950.1	16339850
AT2G24790.1	Zm00001d052138_P004	AT2G32950.1	16339850

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88227	Sorghum	nucleus	80.14	83.45
Os06t0275000-01	Rice	mitochondrion	65.42	70.89
TraesCS6D01G269500.1	Wheat	nucleus	54.21	62.87
TraesCS6B01G319500.1	Wheat	nucleus	53.97	62.43
TraesCS6A01G289400.1	Wheat	nucleus	53.04	61.52
CDY19821	Canola	nucleus	31.07	45.24
CDY02749	Canola	nucleus, plastid	26.87	44.4
CDX88145	Canola	nucleus	30.37	44.22
Bra032061.1-P	Field mustard	nucleus	28.74	42.56
CDY45597	Canola	nucleus	28.74	42.56
Zm00001d003162_P001	Maize	nucleus	31.78	42.5
CDX87105	Canola	nucleus, plastid	31.31	42.27
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	33.41	41.21
CDY36171	Canola	nucleus	27.8	41.03
Zm00001d025770_P001	Maize	nucleus	30.61	40.56
AT2G24790.1	Thale cress	nucleus, plastid	27.8	40.48
Zm00001d051047_P001	Maize	nucleus	29.67	40.45
CDX80476	Canola	nucleus, plastid	31.07	40.43
VIT_11s0052g01800.t01	Wine grape	nucleus, plastid	33.88	40.17
Bra036528.1-P	Field mustard	nucleus	32.24	40.0
Zm00001d017176_P001	Maize	nucleus	30.84	39.4
KRH18980	Soybean	nucleus	33.41	39.18
Bra009805.1-P	Field mustard	nucleus	32.01	39.03
AT5G24930.1	Thale cress	nucleus	32.94	38.95
KRH02915	Soybean	nucleus	33.64	38.5
CDY58843	Canola	nucleus, plastid	29.67	37.13
Bra020425.1-P	Field mustard	nucleus, plastid	29.67	37.13
AT5G57660.1	Thale cress	nucleus, plastid	30.37	36.62
PGSC0003DMT400070680	Potato	nucleus	32.48	36.1
Zm00001d015468_P001	Maize	mitochondrion	31.31	35.92
Solyc07g006630.2.1	Tomato	nucleus	32.24	35.75
CDY25892	Canola	nucleus	27.57	35.44
CDY49730	Canola	nucleus	17.76	34.86
Bra002709.1-P	Field mustard	nucleus	17.76	34.86
Zm00001d046925_P001	Maize	nucleus	29.21	34.34
Zm00001d024200_P001	Maize	nucleus	21.03	32.37
Zm00001d049347_P001	Maize	nucleus	20.09	30.82
Zm00001d051684_P007	Maize	nucleus	18.69	19.7
Zm00001d045804_P003	Maize	nucleus	19.63	19.27
Zm00001d022500_P001	Maize	nucleus	7.48	17.68
Zm00001d029149_P001	Maize	nucleus	15.65	16.88
Zm00001d007107_P001	Maize	nucleus	15.19	15.89
Zm00001d031662_P001	Maize	nucleus	17.52	15.34
Zm00001d017885_P001	Maize	nucleus	15.89	14.75

Protein Annotations

MapMan:15.5.1.2	ProteinID:AQL03080.1	InterPro:CCT_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628
GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0045892	GO:GO:0048571
GO:GO:0048572	GO:GO:0048576	GO:GO:0048579	InterPro:IPR000315	InterPro:IPR010402	UniProt:K7W7Y8
PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF38
SMART:SM00336	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00022212A4	EnsemblPlantsGene:Zm00001d045735	EnsemblPlants:Zm00001d045735_P002
EnsemblPlants:Zm00001d045735_T002	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

constans1Zinc finger protein CONSTANS-LIKE 1

Coordinates

chr9:+:36009335..36013889

Molecular Weight (calculated)

46213.2 Da

IEP (calculated)

5.751

GRAVY (calculated)

-0.247

Length

428 amino acids

Sequence
(BLAST)

001: MTPSVTPWIP LAPTLLLVLC TGLAALWIHH CNFMDYNFDT SVLDEDVAGR GGREGSCPPA WARACDGCRA APSVVYCHAD TAYLCASCNS RVHAANRVAS
101: RHERVRVCEA CECAPAVLAC RADAAALCAA CDAQVHSANP LAGRHQRVPV LPLPAAAVPA ASVLAEAAAT AAAVAGDKDE EVDSWLLLTK DPDDDDKNHN
201: CSSNNNNISS NTSTFYADVD EYFDLVGYSS YCDNHINSNT KQYGMQEQQL LLHKEFGDKE GSEYVVPSQV GQQQSGYHRV IGTEQAASMT PGVSAYTDSI
301: SNSISFSSSM EVGIVPDNMA TTDMPSSGIL LTPAGAISLF SSGPPLQMPL HLASMDREAR VLRYREKKKS RKFEKTIRYA TRKTYAEARP RIKGRFAKRS
401: SDMDVEVDQM FSAAALSSDG SYGTVPWF

Best Arabidopsis Sequence Match ( AT3G02380.1 )
(BLAST)

001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF

Arabidopsis Description

COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.