Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24790.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 16339850 |
| AT2G24790.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 16339850 |
| AT2G24790.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 16339850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G289400.1 | Wheat | nucleus | 97.29 | 97.29 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 97.29 | 97.03 |
| Os06t0275000-01 | Rice | mitochondrion | 65.04 | 60.76 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 58.81 | 56.66 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 62.87 | 54.21 |
| OQU85473 | Sorghum | nucleus | 52.3 | 52.73 |
| CDY19821 | Canola | nucleus | 34.42 | 43.2 |
| CDY36171 | Canola | nucleus | 33.33 | 42.41 |
| CDY02749 | Canola | nucleus, plastid | 29.54 | 42.08 |
| Bra032061.1-P | Field mustard | nucleus | 32.79 | 41.87 |
| CDY45597 | Canola | nucleus | 32.52 | 41.52 |
| VIT_04s0008g07340.t01 | Wine grape | nucleus, plastid | 39.02 | 41.5 |
| CDX88145 | Canola | nucleus | 32.79 | 41.16 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 31.71 | 39.8 |
| CDX87105 | Canola | nucleus, plastid | 33.6 | 39.12 |
| VIT_11s0052g01800.t01 | Wine grape | nucleus, plastid | 38.21 | 39.06 |
| Bra036528.1-P | Field mustard | nucleus | 36.04 | 38.55 |
| CDX80476 | Canola | nucleus, plastid | 34.15 | 38.3 |
| Bra009805.1-P | Field mustard | nucleus | 36.31 | 38.18 |
| TraesCS6D01G202000.1 | Wheat | nucleus | 32.79 | 38.17 |
| AT5G24930.1 | Thale cress | nucleus | 36.86 | 37.57 |
| KRH18980 | Soybean | nucleus | 37.13 | 37.53 |
| KRH02915 | Soybean | nucleus | 36.59 | 36.1 |
| TraesCS2D01G351900.1 | Wheat | nucleus | 31.17 | 36.05 |
| CDY58843 | Canola | nucleus, plastid | 33.33 | 35.96 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 33.06 | 35.67 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 34.15 | 35.49 |
| CDY25892 | Canola | nucleus | 31.71 | 35.14 |
| Solyc07g006630.2.1 | Tomato | nucleus | 35.77 | 34.2 |
| PGSC0003DMT400070680 | Potato | nucleus | 35.5 | 34.03 |
| Bra002709.1-P | Field mustard | nucleus | 20.05 | 33.95 |
| CDY49730 | Canola | nucleus | 20.05 | 33.95 |
| TraesCS7D01G131700.1 | Wheat | nucleus | 22.76 | 33.6 |
| TraesCS6D01G140900.1 | Wheat | mitochondrion | 31.71 | 32.14 |
| TraesCS5D01G170700.1 | Wheat | nucleus | 27.1 | 30.77 |
| TraesCS7D01G484400.1 | Wheat | nucleus | 30.35 | 30.11 |
| TraesCS7D01G220300.1 | Wheat | nucleus | 22.22 | 20.71 |
| TraesCS6D01G267100.1 | Wheat | nucleus | 21.68 | 20.41 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 17.89 | 17.32 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 16.8 | 15.62 |
| TraesCS7D01G264300.1 | Wheat | nucleus | 20.05 | 15.13 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G269500.1 | EnsemblPlantsGene:TraesCS6D01G269500 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF38 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:15.5.1.2 | : |
Description
No Description!
Coordinates
chr6D:+:379572213..379573914
Molecular Weight (calculated)
41000.8 Da
IEP (calculated)
5.582
GRAVY (calculated)
-0.515
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMNCNFNSN LLENEAGRIS FPWARPCDGC HAAPSTVYCC ADAAYLCASC DTQVHSANRV ASRHERVRVC ETCESAPAVL ACHADAAALC TACDAQVHSA
101: NPIAQRHQRV PVLPLPAVAI PAASGFAEAE ASVTAHGDKE EGEEVDSWLL RRNSDDNNCA NKIDRYYNLV GYNMYYDNIT CDPRPEEQYR MQEQHVQNRY
201: IEKEGCECVV PPQVVMASEQ QESDYGTIGA GQAASVTAMT STYTASISND ISFSSMEVGI VPDNSRPDIS NSNILTSSEA MELSGHSLQM PVHFSSMDRE
301: ARVLRYKEKK QTRKFQKTIR YATRKAYAEA RPRIKGRFAK RSDIEHEEDH MLSPPALPDT SSYNTVPWF
101: NPIAQRHQRV PVLPLPAVAI PAASGFAEAE ASVTAHGDKE EGEEVDSWLL RRNSDDNNCA NKIDRYYNLV GYNMYYDNIT CDPRPEEQYR MQEQHVQNRY
201: IEKEGCECVV PPQVVMASEQ QESDYGTIGA GQAASVTAMT STYTASISND ISFSSMEVGI VPDNSRPDIS NSNILTSSEA MELSGHSLQM PVHFSSMDRE
301: ARVLRYKEKK QTRKFQKTIR YATRKAYAEA RPRIKGRFAK RSDIEHEEDH MLSPPALPDT SSYNTVPWF
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
Arabidopsis Description
COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.