Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G57660.1 | CDX82214 | AT3G21150.1 | 21798944 |
| AT5G57660.1 | CDY19582 | AT3G21150.1 | 21798944 |
| AT5G57660.1 | CDY32408 | AT3G21150.1 | 21798944 |
| AT5G57660.1 | CDY50075 | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49730 | Canola | nucleus | 56.76 | 86.7 |
| CDY58843 | Canola | nucleus, plastid | 85.29 | 83.04 |
| CDY02749 | Canola | nucleus, plastid | 64.26 | 82.63 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 87.99 | 82.54 |
| KRH18980 | Soybean | nucleus | 56.76 | 51.78 |
| KRH02915 | Soybean | nucleus | 56.16 | 50.0 |
| CDY19821 | Canola | nucleus | 42.04 | 47.62 |
| CDX88145 | Canola | nucleus | 41.44 | 46.94 |
| CDY36171 | Canola | nucleus | 40.84 | 46.9 |
| CDY45597 | Canola | nucleus | 39.94 | 46.02 |
| CDX87105 | Canola | nucleus, plastid | 42.04 | 44.16 |
| CDX80476 | Canola | nucleus, plastid | 42.64 | 43.16 |
| CDY69474 | Canola | nucleus, plastid | 12.31 | 42.71 |
| CDY71884 | Canola | nucleus | 32.13 | 36.27 |
| CDY71818 | Canola | nucleus | 31.23 | 35.14 |
| CDX69493 | Canola | nucleus | 35.44 | 35.01 |
| CDY26470 | Canola | nucleus | 34.53 | 34.53 |
| CDX85529 | Canola | nucleus | 32.73 | 34.38 |
| CDX90969 | Canola | nucleus | 32.73 | 33.96 |
| CDX69494 | Canola | nucleus | 37.24 | 33.7 |
| CDY26469 | Canola | nucleus | 36.64 | 33.33 |
| CDX74261 | Canola | nucleus | 21.92 | 32.02 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 35.14 | 31.71 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 35.14 | 31.71 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 34.83 | 31.35 |
| CDX91989 | Canola | nucleus | 21.02 | 30.7 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 33.63 | 29.24 |
| Os06t0275000-01 | Rice | mitochondrion | 34.23 | 28.86 |
| EER88227 | Sorghum | nucleus | 35.44 | 28.71 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 33.03 | 28.57 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 32.73 | 28.46 |
| OQU85473 | Sorghum | nucleus | 30.63 | 27.87 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 35.44 | 27.57 |
| CDY05691 | Canola | nucleus | 23.12 | 22.19 |
| CDY15696 | Canola | nucleus | 19.22 | 22.15 |
| CDY48743 | Canola | nucleus | 23.12 | 22.0 |
| CDY35952 | Canola | nucleus | 24.02 | 21.68 |
| CDY28029 | Canola | nucleus | 24.02 | 21.51 |
| CDY22125 | Canola | nucleus | 23.42 | 21.31 |
| CDY07979 | Canola | nucleus | 22.52 | 21.31 |
| CDX86318 | Canola | nucleus | 21.32 | 19.83 |
| CDX85321 | Canola | nucleus | 21.32 | 19.78 |
| CDY53026 | Canola | nucleus | 19.82 | 19.76 |
| CDX74034 | Canola | nucleus | 23.12 | 19.74 |
| CDX80141 | Canola | nucleus | 19.22 | 19.28 |
| CDY30385 | Canola | nucleus | 21.02 | 18.09 |
| CDY68819 | Canola | nucleus | 21.02 | 18.09 |
| CDY11755 | Canola | nucleus | 21.02 | 17.81 |
| CDY66639 | Canola | nucleus | 21.32 | 17.62 |
| CDY64255 | Canola | nucleus | 19.52 | 17.52 |
| CDY55657 | Canola | nucleus | 19.82 | 17.1 |
| CDX90119 | Canola | nucleus | 20.12 | 15.99 |
| CDY04213 | Canola | nucleus | 15.02 | 14.88 |
| CDY48428 | Canola | nucleus | 10.21 | 12.59 |
| CDY07393 | Canola | nucleus | 15.62 | 9.7 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078GL61 | UniProt:A0A078GL61 | InterPro:CCT_domain | EnsemblPlants:CDY25892 | ProteinID:CDY25892 |
| ProteinID:CDY25892.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00033361001 | InterPro:IPR000315 | InterPro:IPR010402 |
| PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF14 |
| SMART:SM00336 | UniParc:UPI0004EDC325 | InterPro:Znf_B-box | SEG:seg | : | : |
Description
BnaC09g32640DBnaC09g32640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL61]
Coordinates
chrLK032182:-:136091..137576
Molecular Weight (calculated)
36551.7 Da
IEP (calculated)
6.762
GRAVY (calculated)
-0.309
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFGLENIKS ISGEWGAAAR SCDACQSVSA AVFCRVDSAF LCLTCDTRIH SYTRHERVFL CEVCEQAPAA VTCKADAASL CVTCDSDIHS ANPLASRHER
101: VPVESFFDSA ETAVAKISAS TFGALGSSAT VDLTAVPVMG NSDELGLCPL LLPNDFSEPA KTEMKSSEFM FSDFDRLIDF EYPNSFNHQQ PHNNAGADSL
201: VPVQTKTEPL PLSKNDHCFD IDFCRSKLSA FTYPTQSISH SVSTSTTTIT ASTATTGDQA SSMNREARVL RYREKRKNRK FEKTIRYASR KAYAESRPRI
301: KGRFAKRTET ENDNVFLSHV YASAAQYGVV PTF
101: VPVESFFDSA ETAVAKISAS TFGALGSSAT VDLTAVPVMG NSDELGLCPL LLPNDFSEPA KTEMKSSEFM FSDFDRLIDF EYPNSFNHQQ PHNNAGADSL
201: VPVQTKTEPL PLSKNDHCFD IDFCRSKLSA FTYPTQSISH SVSTSTTTIT ASTATTGDQA SSMNREARVL RYREKRKNRK FEKTIRYASR KAYAESRPRI
301: KGRFAKRTET ENDNVFLSHV YASAAQYGVV PTF
001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
Arabidopsis Description
COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.