Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023858.1-P | Field mustard | nucleus | 99.48 | 99.48 |
| CDY64255 | Canola | nucleus | 93.78 | 97.57 |
| AT3G21880.2 | Thale cress | nucleus | 69.17 | 72.55 |
| KRH26833 | Soybean | nucleus | 45.6 | 41.61 |
| KRH22524 | Soybean | nucleus | 45.34 | 41.37 |
| PGSC0003DMT400003198 | Potato | nucleus | 42.23 | 38.63 |
| Solyc05g046040.1.1 | Tomato | nucleus | 41.71 | 38.42 |
| VIT_12s0059g02500.t01 | Wine grape | nucleus | 41.71 | 37.1 |
| CDY48743 | Canola | nucleus | 28.76 | 31.71 |
| CDY05691 | Canola | nucleus | 28.24 | 31.41 |
| CDY07979 | Canola | nucleus | 28.5 | 31.25 |
| CDY35952 | Canola | nucleus | 29.79 | 31.17 |
| CDY22125 | Canola | nucleus | 29.27 | 30.87 |
| CDY28029 | Canola | nucleus | 29.53 | 30.65 |
| CDX85321 | Canola | nucleus | 28.5 | 30.64 |
| CDX86318 | Canola | nucleus | 28.24 | 30.45 |
| CDY69474 | Canola | nucleus, plastid | 7.25 | 29.17 |
| CDX74034 | Canola | nucleus | 28.5 | 28.21 |
| CDY15696 | Canola | nucleus | 19.17 | 25.61 |
| VIT_19s0014g05120.t01 | Wine grape | nucleus | 23.32 | 24.0 |
| CDY02749 | Canola | nucleus, plastid | 16.06 | 23.94 |
| CDY19821 | Canola | nucleus | 18.13 | 23.81 |
| CDX88145 | Canola | nucleus | 17.88 | 23.47 |
| CDX80141 | Canola | nucleus | 19.95 | 23.19 |
| CDY53026 | Canola | nucleus | 19.95 | 23.05 |
| CDY45597 | Canola | nucleus | 17.1 | 22.84 |
| CDY36171 | Canola | nucleus | 17.1 | 22.76 |
| CDY04213 | Canola | nucleus | 19.43 | 22.32 |
| CDX87105 | Canola | nucleus, plastid | 18.13 | 22.08 |
| CDY11755 | Canola | nucleus | 22.02 | 21.63 |
| CDX90969 | Canola | nucleus | 17.88 | 21.5 |
| CDX85529 | Canola | nucleus | 17.62 | 21.45 |
| CDY30385 | Canola | nucleus | 21.5 | 21.45 |
| CDY68819 | Canola | nucleus | 21.5 | 21.45 |
| CDX80476 | Canola | nucleus, plastid | 18.13 | 21.28 |
| CDY71884 | Canola | nucleus | 16.06 | 21.02 |
| CDY71818 | Canola | nucleus | 16.06 | 20.95 |
| CDX69493 | Canola | nucleus | 18.13 | 20.77 |
| CDY66639 | Canola | nucleus | 21.5 | 20.6 |
| CDX90119 | Canola | nucleus | 22.28 | 20.53 |
| CDY26470 | Canola | nucleus | 17.62 | 20.42 |
| CDX69494 | Canola | nucleus | 19.43 | 20.38 |
| CDY26469 | Canola | nucleus | 19.17 | 20.22 |
| CDY58843 | Canola | nucleus, plastid | 17.62 | 19.88 |
| CDY25892 | Canola | nucleus | 17.1 | 19.82 |
| CDX91989 | Canola | nucleus | 10.36 | 17.54 |
| CDX74261 | Canola | nucleus | 10.1 | 17.11 |
| CDY49730 | Canola | nucleus | 9.33 | 16.51 |
| CDY07393 | Canola | nucleus | 20.98 | 15.11 |
| CDY48428 | Canola | nucleus | 9.59 | 13.7 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078J160 | UniProt:A0A078J160 | InterPro:CCT_domain | EnsemblPlants:CDY55657 | ProteinID:CDY55657 |
| ProteinID:CDY55657.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00017166001 | InterPro:IPR000315 | InterPro:IPR010402 |
| PFAM:PF06203 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF27 | SMART:SM00336 | UniParc:UPI0004EE8291 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
BnaA01g36580DBnaA01g36580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J160]
Coordinates
chrLK033418:+:41764..43180
Molecular Weight (calculated)
43012.8 Da
IEP (calculated)
5.628
GRAVY (calculated)
-0.529
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPKCDYCAT TQAIIYCKYD LAKLCLKCDV HVHSPNPLSR RHMRSLICEK CFSQPAVIRC LDQKVSYCQG CQWHVRSCSA LGHRLQSLEP FSGCPSPTEF
101: SRMWSSILEP SVSSLVNPSI GSLPLADPNN DMFEMSKINE LDDLIGSSYS MMSQNITYIQ NLSDQSSFFS GDSKGCPDLI LKLEEGEEDL CEGLNLDNAP
201: LNFDVGDDII CCSPQEHIES DQTLPNGPLA YKNIISVTDS NFTTDNPLEA TSTGHQDCKS YHQSGPLQMN INIGLPLPTS PILFGQINPN IKGHESTAVE
301: YQDCGMSTGL IMSDSPWESN LEVGSPQTRN EAKLRYKEKK LKRTFGKQIR YASRKARADT RKRVKGRFVK AGDNYDYDPS SPTTNQ
101: SRMWSSILEP SVSSLVNPSI GSLPLADPNN DMFEMSKINE LDDLIGSSYS MMSQNITYIQ NLSDQSSFFS GDSKGCPDLI LKLEEGEEDL CEGLNLDNAP
201: LNFDVGDDII CCSPQEHIES DQTLPNGPLA YKNIISVTDS NFTTDNPLEA TSTGHQDCKS YHQSGPLQMN INIGLPLPTS PILFGQINPN IKGHESTAVE
301: YQDCGMSTGL IMSDSPWESN LEVGSPQTRN EAKLRYKEKK LKRTFGKQIR YASRKARADT RKRVKGRFVK AGDNYDYDPS SPTTNQ
001: MSPSMEPKCD HCATSQALIY CKSDLAKLCL NCDVHVHSAN PLSHRHIRSL ICEKCFSQPA AIRCLDEKVS YCQGCHWHES NCSELGHRVQ SLNPFSGCPS
101: PTDFNRMWSS ILEPPVSGLL SPFVGSFPLN DLNNTMFDTA YSMVPHNISY TQNFSDNLSF FSTESKGYPD MVLKLEEGEE DLCEGLNLDD APLNFDVGDD
201: IIGCSSEVHI EPDHTVPNCL LIDKTNTSSF TGSNFTVDKA LEASPPGQQM NINTGLQLPL SPVLFGQIHP SLNITGENNA ADYQDCGMSP GFIMSEAPWE
301: TNFEVSCPQA RNEAKLRYKE KKLKRSFGKQ IRYASRKARA DTRKRVKGRF VKAGDSYDYD PSSPTTNN
101: PTDFNRMWSS ILEPPVSGLL SPFVGSFPLN DLNNTMFDTA YSMVPHNISY TQNFSDNLSF FSTESKGYPD MVLKLEEGEE DLCEGLNLDD APLNFDVGDD
201: IIGCSSEVHI EPDHTVPNCL LIDKTNTSSF TGSNFTVDKA LEASPPGQQM NINTGLQLPL SPVLFGQIHP SLNITGENNA ADYQDCGMSP GFIMSEAPWE
301: TNFEVSCPQA RNEAKLRYKE KKLKRSFGKQ IRYASRKARA DTRKRVKGRF VKAGDSYDYD PSSPTTNN
Arabidopsis Description
B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.