Factsheet for Solyc05g046040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003198	Potato	nucleus	94.27	93.6
KRH26833	Soybean	nucleus	49.4	48.94
KRH22524	Soybean	nucleus	49.16	48.7
VIT_12s0059g02500.t01	Wine grape	nucleus	48.93	47.23
AT4G15250.1	Thale cress	nucleus	36.28	46.06
AT3G21880.2	Thale cress	nucleus	38.66	44.02
CDY64255	Canola	nucleus	38.42	43.4
Bra023858.1-P	Field mustard	nucleus	38.42	41.71
CDY55657	Canola	nucleus	38.42	41.71
Solyc05g020020.2.1	Tomato	nucleus	35.08	35.85
Solyc07g045180.2.1	Tomato	nucleus	34.37	34.45
Solyc12g006240.1.1	Tomato	nucleus	20.05	31.23
VIT_19s0014g05120.t01	Wine grape	nucleus	25.78	28.8
Solyc02g089500.2.1	Tomato	nucleus	8.83	26.06
Solyc12g096500.1.1	Tomato	nucleus	19.57	22.91
Solyc08g006530.2.1	Tomato	nucleus	18.85	22.64
Solyc09g074560.2.1	Tomato	nucleus	19.57	21.98
Solyc05g024010.2.1	Tomato	nucleus	22.43	20.8
Solyc02g089540.2.1	Tomato	nucleus	19.09	20.46
Solyc02g089520.1.1	Tomato	nucleus	18.38	18.83
Solyc07g006630.2.1	Tomato	nucleus	16.95	18.39
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	20.53	18.11

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402
UniProt:K4C0T7	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF27
SMART:SM00336	EnsemblPlantsGene:Solyc05g046040.1	EnsemblPlants:Solyc05g046040.1.1	UniParc:UPI0002766AAD	InterPro:Znf_B-box	SEG:seg

Description

No Description!

Coordinates

chr5:+:58170616..58172841

Molecular Weight (calculated)

46265.0 Da

IEP (calculated)

4.728

GRAVY (calculated)

-0.551

Length

419 amino acids

Sequence
(BLAST)

001: MDPLCDLCGE VRAVVYCKSD SARLCLQCDD YVHSPNLISR RHSRSFICDK CNSQPSIVRC MDEAISLCER CDWDGNGCIG TGHRLKKLNP YTGCPSPDEF
101: TKMLSQVLEM PIGTDTNFGS FGNSLGSSLS INENNSSLEN KVNEDSFVSS KLLASNYKFE AWSIPPEPNY LNSYQIDLAP FSEGSGLSKQ DCPIKDLGLQ
201: EGDDLSKGVD FDDVTLDFNC SYEILPDSRQ TGFSDENKEL DCLVMEKNSS VTGSNNVETS HEATSSVQQE YMGLQSSQIS AAASSTNLLQ TMSANANCML
301: MNSTCNGSIG ALPFLPAPIH PSMSLSLSNI TGESCAEQDC GLSPGFLNEA PWDLSLENCP QKRHEAKMRY NEKKKTRTFG KQIRYASRKA RADTRRRVKG
401: RFVKAGEAYD YDPSETRDF

Best Arabidopsis Sequence Match ( AT3G21880.2 )
(BLAST)

001: MSPSMEPKCD HCATSQALIY CKSDLAKLCL NCDVHVHSAN PLSHRHIRSL ICEKCFSQPA AIRCLDEKVS YCQGCHWHES NCSELGHRVQ SLNPFSGCPS
101: PTDFNRMWSS ILEPPVSGLL SPFVGSFPLN DLNNTMFDTA YSMVPHNISY TQNFSDNLSF FSTESKGYPD MVLKLEEGEE DLCEGLNLDD APLNFDVGDD
201: IIGCSSEVHI EPDHTVPNCL LIDKTNTSSF TGSNFTVDKA LEASPPGQQM NINTGLQLPL SPVLFGQIHP SLNITGENNA ADYQDCGMSP GFIMSEAPWE
301: TNFEVSCPQA RNEAKLRYKE KKLKRSFGKQ IRYASRKARA DTRKRVKGRF VKAGDSYDYD PSSPTTNN

Arabidopsis Description

B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.