Factsheet for Bra023858.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55657	Canola	nucleus	99.48	99.48
CDY64255	Canola	nucleus	93.52	97.3
AT3G21880.2	Thale cress	nucleus	68.91	72.28
KRH26833	Soybean	nucleus	45.6	41.61
KRH22524	Soybean	nucleus	45.34	41.37
PGSC0003DMT400003198	Potato	nucleus	42.23	38.63
Solyc05g046040.1.1	Tomato	nucleus	41.71	38.42
VIT_12s0059g02500.t01	Wine grape	nucleus	41.71	37.1
Bra020709.1-P	Field mustard	nucleus	28.5	31.34
Bra001264.1-P	Field mustard	nucleus	28.24	31.05
Bra040020.1-P	Field mustard	nucleus	29.27	30.87
Bra037499.1-P	Field mustard	nucleus	27.2	30.43
Bra029666.1-P	Field mustard	nucleus	29.79	29.79
Bra030070.1-P	Field mustard	nucleus	19.43	24.35
VIT_19s0014g05120.t01	Wine grape	nucleus	23.32	24.0
Bra004423.1-P	Field mustard	nucleus	19.95	23.05
Bra032061.1-P	Field mustard	nucleus	17.1	22.84
Bra023541.1-P	Field mustard	nucleus	17.62	21.59
Bra008668.1-P	Field mustard	nucleus	18.13	20.77
Bra010908.1-P	Field mustard	nucleus	22.28	20.57
Bra021464.1-P	Field mustard	nucleus	17.1	20.56
Bra008669.1-P	Field mustard	nucleus	19.43	20.49
Bra041077.1-P	Field mustard	nucleus	21.5	20.34
Bra036528.1-P	Field mustard	nucleus	18.13	20.29
Bra009805.1-P	Field mustard	nucleus	18.13	19.94
Bra020425.1-P	Field mustard	nucleus, plastid	17.62	19.88
Bra001043.1-P	Field mustard	nucleus	9.84	16.67
Bra002709.1-P	Field mustard	nucleus	9.33	16.51

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra023858	EnsemblPlants:Bra023858.1	EnsemblPlants:Bra023858.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4E504	PFAM:PF06203	PFscan:PS51017
PANTHER:PTHR31717	PANTHER:PTHR31717:SF27	SMART:SM00336	UniParc:UPI0002544530	InterPro:Znf_B-box	SEG:seg

Description

AT3G21880 (E=3e-056) | zinc finger (B-box type) family protein

Coordinates

chrA01:-:20499917..20501333

Molecular Weight (calculated)

43030.8 Da

IEP (calculated)

5.628

GRAVY (calculated)

-0.520

Length

386 amino acids

Sequence
(BLAST)

001: MEPKCDYCAT TQAIIYCKYD LAKLCLKCDV HVHSPNPLSR RHMRSLICEK CFSQPAVIRC LDQKVSYCQG CQWHVRSCSA LGHRLQSLEP FSGCPSPTEF
101: SRMWSSILES SVSSLVNPSI GSLPLVDPNN DMFEMSKINE LDDLIGSSYS MMSQNITYIQ NLSDQSSFFS GDSKGCPDLI LKLEEGEEDL CEGLNLDNAP
201: LNFDVGDDII CCSPQEHIES DQTLPNGPLA YKNIISVTDS NFTTDNPLEA TSTGHQDCKS YHQSGPLQMN INIGLPLPTS PILFGQINPN IKGHESTAVE
301: YQDCGMSTGL IMSDSPWESN LEVGSPQTRN EAKLRYKEKK LKRTFGKQIR YASRKARADT RKRVKGRFVK AGDNYDYDPS SPTTNQ

Best Arabidopsis Sequence Match ( AT3G21880.2 )
(BLAST)

001: MSPSMEPKCD HCATSQALIY CKSDLAKLCL NCDVHVHSAN PLSHRHIRSL ICEKCFSQPA AIRCLDEKVS YCQGCHWHES NCSELGHRVQ SLNPFSGCPS
101: PTDFNRMWSS ILEPPVSGLL SPFVGSFPLN DLNNTMFDTA YSMVPHNISY TQNFSDNLSF FSTESKGYPD MVLKLEEGEE DLCEGLNLDD APLNFDVGDD
201: IIGCSSEVHI EPDHTVPNCL LIDKTNTSSF TGSNFTVDKA LEASPPGQQM NINTGLQLPL SPVLFGQIHP SLNITGENNA ADYQDCGMSP GFIMSEAPWE
301: TNFEVSCPQA RNEAKLRYKE KKLKRSFGKQ IRYASRKARA DTRKRVKGRF VKAGDSYDYD PSSPTTNN

Arabidopsis Description

B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.