Factsheet for Bra020425.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001815.1-P
Bra031255.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57660.1	Bra001815.1-P	AT3G21150.1	21798944
AT5G57660.1	Bra031255.1-P	AT3G21150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58843	Canola	nucleus, plastid	99.71	99.71
Bra002709.1-P	Field mustard	nucleus	53.8	84.4
AT5G57660.1	Thale cress	nucleus, plastid	85.67	82.54
KRH18980	Soybean	nucleus	57.6	53.97
KRH02915	Soybean	nucleus	57.31	52.41
Bra032061.1-P	Field mustard	nucleus	40.64	48.1
Bra036528.1-P	Field mustard	nucleus	46.78	46.38
Bra009805.1-P	Field mustard	nucleus	46.49	45.3
Bra008668.1-P	Field mustard	nucleus	36.84	37.39
Bra023541.1-P	Field mustard	nucleus	34.21	37.14
Bra021464.1-P	Field mustard	nucleus	34.8	37.07
Bra008669.1-P	Field mustard	nucleus	37.72	35.25
Bra001043.1-P	Field mustard	nucleus	22.81	34.21
TraesCS6D01G269500.1	Wheat	nucleus	35.67	33.06
TraesCS6A01G289400.1	Wheat	nucleus	35.67	33.06
TraesCS6B01G319500.1	Wheat	nucleus	35.09	32.43
Os06t0275000-01	Rice	mitochondrion	35.96	31.14
EER88227	Sorghum	nucleus	36.84	30.66
TraesCS7D01G213000.2	Wheat	nucleus	33.92	30.29
OQU85473	Sorghum	nucleus	32.16	30.05
TraesCS7B01G118300.1	Wheat	nucleus	33.33	29.77
Zm00001d045735_P002	Maize	extracellular, vacuole	37.13	29.67
TraesCS7A01G211300.1	Wheat	nucleus	33.33	29.61
Bra001264.1-P	Field mustard	nucleus	23.39	22.79
Bra020709.1-P	Field mustard	nucleus	23.1	22.51
Bra040020.1-P	Field mustard	nucleus	23.68	22.13
Bra029666.1-P	Field mustard	nucleus	24.27	21.5
Bra030070.1-P	Field mustard	nucleus	18.42	20.45
Bra004423.1-P	Field mustard	nucleus	19.88	20.36
Bra037499.1-P	Field mustard	nucleus	19.88	19.71
Bra023858.1-P	Field mustard	nucleus	19.88	17.62
Bra041077.1-P	Field mustard	nucleus	20.76	17.4
Bra010908.1-P	Field mustard	nucleus	19.88	16.27

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra020425	EnsemblPlants:Bra020425.1	EnsemblPlants:Bra020425.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4DV81	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF14	SMART:SM00336	UniParc:UPI0002545D16
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

AT5G57660 (E=7e-151) ATCOL5, COL5 | zinc finger (B-box type) family protein

Coordinates

chrA02:-:6686861..6688023

Molecular Weight (calculated)

37616.9 Da

IEP (calculated)

5.671

GRAVY (calculated)

-0.277

Length

342 amino acids

Sequence
(BLAST)

001: MGFGLESIKP LSGGWGAAAR SCDACKSASA AVYCRFDSAF LCITCDTSIH SFTRHERVYL CEVCEQAPAA VTCKADAASL CVTCDSDIHS ANPLASRHER
101: VPVESFFDSA VAKISPSTFG VLGDSTTVDL TAVPVIGNAD ELGLCPWLLP HDFNEPAKIE TVTELKSSEF MFSDFDRLID FEYPNTFGAD SLVPVQTKTE
201: PLPVTNNDHC FDIDFCRSKL STFTYPTQSI SHSVSTSSLE YGVVPDGTTS VPFNRSTITT STGTTGEQPS SMDREARVLR YREKRKNRKF EKTIRYASRK
301: AYAESRPRIK GRFAKRTETE NDDVFFSQVY ASAGQYGVVP TF

Best Arabidopsis Sequence Match ( AT5G57660.1 )
(BLAST)

001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF

Arabidopsis Description

COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.